Wall clock time and date at job start Mon Mar 30 2020 03:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86795 * 120.00180 * 2 1 4 4 H 1.48504 * 109.47364 * 275.40522 * 3 2 1 5 5 H 1.48502 * 109.47088 * 35.40190 * 3 2 1 6 6 H 1.48499 * 109.47536 * 155.40324 * 3 2 1 7 7 C 1.39884 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00013 * 341.78949 * 7 2 1 9 9 C 1.41158 * 120.00060 * 161.78883 * 7 2 1 10 10 C 1.41190 * 120.60718 * 330.32022 * 9 7 2 11 11 C 1.36705 * 118.41046 * 180.02562 * 10 9 7 12 12 C 1.50707 * 120.20777 * 179.97438 * 11 10 9 13 13 F 1.39902 * 109.47034 * 299.99852 * 12 11 10 14 14 F 1.39896 * 109.47400 * 59.99876 * 12 11 10 15 15 C 1.39424 * 119.57871 * 359.97438 * 11 10 9 16 16 O 1.35491 * 119.38109 * 179.97438 * 15 11 10 17 17 N 1.32540 * 121.23236 * 359.72548 * 15 11 10 18 18 C 1.31749 * 121.72196 * 0.57000 * 17 15 11 19 19 F 1.35103 * 119.86994 * 179.71499 * 18 17 15 20 20 H 0.96998 * 120.00020 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.79529 * 359.97438 * 10 9 7 22 22 H 1.09006 * 109.46885 * 180.02562 * 12 11 10 23 23 H 0.96701 * 113.99647 * 90.00426 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3764 2.1123 -1.3939 5 1 1.5023 2.6170 0.8111 6 1 3.5931 1.4099 0.5827 7 6 2.0085 -1.2114 0.0005 8 1 1.5091 -2.1232 0.2932 9 6 3.3670 -1.2422 -0.3815 10 6 3.8732 -0.3097 -1.3130 11 6 5.1958 -0.3807 -1.6513 12 6 5.7784 0.5941 -2.6420 13 9 5.1121 0.4695 -3.8659 14 9 5.6256 1.8979 -2.1585 15 6 6.0022 -1.3607 -1.0741 16 8 7.3124 -1.4278 -1.4127 17 7 5.5121 -2.2248 -0.1966 18 6 4.2442 -2.2053 0.1609 19 9 3.7831 -3.1076 1.0545 20 1 -0.4850 0.8400 -0.0004 21 1 3.2306 0.4412 -1.7485 22 1 6.8380 0.3800 -2.7822 23 1 7.8915 -0.8949 -0.8508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238694979.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:23 Heat of formation + Delta-G solvation = -183.911779 kcal Electronic energy + Delta-G solvation = -16365.360915 eV Core-core repulsion = 12956.002061 eV Total energy + Delta-G solvation = -3409.358854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.99271 -49.61404 -47.98517 -41.04950 -37.99873 -35.93384 -33.99109 -32.48252 -27.48229 -27.00421 -24.55452 -22.79843 -20.16936 -19.82710 -18.97335 -18.30562 -17.96749 -17.91896 -17.45330 -16.74960 -16.39291 -15.77883 -15.13410 -14.93113 -14.79358 -14.45216 -14.37827 -14.10625 -13.77223 -13.45762 -13.06997 -12.84071 -12.53995 -12.07507 -11.91653 -11.53423 -10.78309 -10.52556 -9.84045 -9.20141 -6.80069 -0.11574 0.25108 1.17286 1.26283 1.36211 1.93038 2.14846 2.48307 2.71630 2.95101 3.21033 3.41745 3.72871 3.89657 4.05484 4.39615 4.57662 4.87560 4.94747 5.17825 5.45089 5.88839 6.08689 6.34024 6.71626 6.92720 7.85143 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021716 B = 0.014387 C = 0.009700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.053933 B = 1945.775148 C = 2885.764970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.057 3.943 3 Si 0.946 3.054 4 H -0.249 1.249 5 H -0.257 1.257 6 H -0.251 1.251 7 C -0.437 4.437 8 H 0.077 0.923 9 C 0.012 3.988 10 C -0.149 4.149 11 C -0.185 4.185 12 C 0.322 3.678 13 F -0.208 7.208 14 F -0.208 7.208 15 C 0.230 3.770 16 O -0.472 6.472 17 N -0.509 5.509 18 C 0.198 3.802 19 F -0.129 7.129 20 H 0.308 0.692 21 H 0.130 0.870 22 H 0.169 0.831 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 5.896 -2.908 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.173 1.173 5 H -0.181 1.181 6 H -0.175 1.175 7 C -0.464 4.464 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.174 4.174 11 C -0.189 4.189 12 C 0.268 3.732 13 F -0.189 7.189 14 F -0.189 7.189 15 C 0.051 3.949 16 O -0.280 6.280 17 N -0.232 5.232 18 C 0.041 3.959 19 F -0.109 7.109 20 H 0.119 0.881 21 H 0.148 0.852 22 H 0.186 0.814 23 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.846 5.012 -2.986 10.596 hybrid contribution -0.790 0.893 0.368 1.247 sum 8.056 5.904 -2.618 10.325 Atomic orbital electron populations 1.69664 1.08980 1.32909 1.30876 1.26816 0.95501 1.03891 0.90263 0.85758 0.80143 0.76720 0.80729 1.17340 1.18148 1.17452 1.19414 0.92764 0.96867 1.37339 0.90454 1.18307 0.94058 0.93410 0.93696 1.20851 0.95322 1.02181 0.99058 1.20889 0.95678 0.99271 1.03091 1.20568 0.99000 0.76738 0.76920 1.92974 1.84285 1.95796 1.45878 1.92971 1.97322 1.40129 1.88461 1.17566 0.86005 0.93698 0.97638 1.84760 1.12951 1.73516 1.56751 1.65847 1.15249 1.26619 1.15448 1.17952 0.87797 0.94700 0.95497 1.91439 1.87821 1.66182 1.65415 0.88084 0.85237 0.81424 0.73519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.31 13.93 21.82 0.30 -39.01 14 2 C 0.06 2.75 5.42 85.23 0.46 3.21 14 3 Si 0.95 38.16 24.53 68.60 1.68 39.85 14 4 H -0.25 -9.58 6.70 99.48 0.67 -8.91 14 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 14 6 H -0.25 -10.45 6.86 99.48 0.68 -9.77 14 7 C -0.44 -22.78 9.27 23.39 0.22 -22.56 14 8 H 0.08 4.35 7.98 -2.91 -0.02 4.33 14 9 C 0.01 0.58 5.12 -21.13 -0.11 0.47 14 10 C -0.15 -6.62 6.77 22.64 0.15 -6.47 14 11 C -0.18 -7.15 5.37 -19.94 -0.11 -7.25 14 12 C 0.32 9.83 5.42 71.24 0.39 10.22 14 13 F -0.21 -6.98 17.26 44.97 0.78 -6.20 14 14 F -0.21 -6.62 17.26 44.97 0.78 -5.84 14 15 C 0.23 8.94 7.72 84.87 0.66 9.60 14 16 O -0.47 -13.85 12.30 -87.92 -1.08 -14.93 14 17 N -0.51 -23.18 10.39 -307.53 -3.19 -26.37 14 18 C 0.20 9.73 8.45 85.41 0.72 10.45 14 19 F -0.13 -6.37 16.81 44.97 0.76 -5.61 14 20 H 0.31 13.24 8.30 -92.71 -0.77 12.47 14 21 H 0.13 5.67 4.80 -2.91 -0.01 5.65 14 22 H 0.17 3.63 6.99 -2.38 -0.02 3.61 14 23 H 0.41 7.37 9.06 -74.06 -0.67 6.70 14 Total: -1.00 -58.09 223.78 2.96 -55.13 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.56 Total: 5.34 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 2.38 Total: -2.35 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -2.89 Total: -65.38 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.08 Total: -14.93 kcal Atomic # 9 Polarization: -19.96 SS G_CDS: 2.31 Total: -17.66 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.68 Total: 39.85 kcal Total: -58.09 2.96 -55.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694979.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.781 kcal (2) G-P(sol) polarization free energy of solvation -58.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds