Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48502 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 299.99646 * 3 2 1 6 6 H 1.48496 * 109.46961 * 59.99572 * 3 2 1 7 7 C 1.40019 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.41359 * 120.00188 * 0.02562 * 7 2 1 10 10 N 1.33744 * 119.78284 * 352.99114 * 9 7 2 11 11 C 1.31832 * 121.50952 * 179.97438 * 10 9 7 12 12 O 1.35618 * 119.54987 * 180.02562 * 11 10 9 13 13 C 1.39451 * 120.90453 * 359.97438 * 11 10 9 14 14 C 1.38932 * 119.47944 * 0.25193 * 13 11 10 15 15 F 1.35093 * 120.69795 * 179.72839 * 14 13 11 16 16 C 1.38644 * 118.60134 * 359.50452 * 14 13 11 17 17 C 1.50700 * 120.46284 * 180.21776 * 16 14 13 18 18 F 1.39903 * 109.46841 * 121.99047 * 17 16 14 19 19 F 1.39895 * 109.46867 * 241.98727 * 17 16 14 20 20 H 0.96997 * 119.99919 * 0.02562 * 1 2 3 21 21 H 0.96705 * 113.99912 * 269.97378 * 12 11 10 22 22 H 1.08004 * 120.26138 * 179.97438 * 13 11 10 23 23 H 1.08998 * 109.47104 * 1.98782 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8826 2.3964 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3008 -2.4368 0.0005 10 7 -0.0291 -2.4361 0.1417 11 6 -0.7221 -3.5576 0.1460 12 8 -2.0697 -3.5106 0.2913 13 6 -0.0886 -4.7916 0.0021 14 6 1.2923 -4.8384 -0.1424 15 9 1.9319 -6.0206 -0.2781 16 6 1.9998 -3.6461 -0.1493 17 6 3.4983 -3.6477 -0.3084 18 9 3.8491 -2.8870 -1.4290 19 9 4.0891 -3.0959 0.8333 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3678 -3.5512 1.2104 22 1 -0.6665 -5.7040 0.0076 23 1 3.8486 -4.6714 -0.4401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238695401.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -180.932727 kcal Electronic energy + Delta-G solvation = -16435.517767 eV Core-core repulsion = 13026.288095 eV Total energy + Delta-G solvation = -3409.229673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.07741 -49.64795 -47.69535 -40.54618 -37.86076 -35.51375 -32.66840 -31.97076 -28.63293 -26.18917 -23.82663 -22.90096 -20.24534 -19.40743 -18.38894 -18.00423 -17.96879 -17.28952 -16.87467 -16.76355 -16.49834 -15.57253 -15.19043 -14.90146 -14.65506 -14.15143 -14.11731 -13.65680 -13.36960 -12.97238 -12.85059 -12.78462 -12.31799 -11.98061 -11.61781 -11.29853 -10.18516 -9.89250 -9.78193 -8.56107 -6.85774 0.33639 0.62922 1.37795 1.45354 1.54664 2.15235 2.51149 2.92999 3.07578 3.33814 3.48955 3.56343 3.94375 4.33092 4.35341 4.62838 4.86852 4.96861 5.12393 5.25393 5.73736 6.01590 6.30728 6.56967 6.95876 7.78078 8.18677 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022445 B = 0.013503 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.175722 B = 2073.055943 C = 3141.129512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.021 3.979 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.098 0.902 9 C 0.275 3.725 10 N -0.533 5.533 11 C 0.362 3.638 12 O -0.494 6.494 13 C -0.367 4.367 14 C 0.209 3.791 15 F -0.134 7.134 16 C -0.406 4.406 17 C 0.342 3.658 18 F -0.212 7.212 19 F -0.213 7.213 20 H 0.289 0.711 21 H 0.412 0.588 22 H 0.146 0.854 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -2.849 1.456 3.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.204 4.204 3 Si 0.808 3.192 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.446 4.446 8 H 0.116 0.884 9 C 0.152 3.848 10 N -0.256 5.256 11 C 0.170 3.830 12 O -0.303 6.303 13 C -0.391 4.391 14 C 0.184 3.816 15 F -0.113 7.113 16 C -0.412 4.412 17 C 0.288 3.712 18 F -0.193 7.193 19 F -0.194 7.194 20 H 0.100 0.900 21 H 0.272 0.728 22 H 0.163 0.837 23 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.778 -1.896 0.945 2.766 hybrid contribution 0.494 -0.420 0.346 0.735 sum 2.272 -2.316 1.290 3.492 Atomic orbital electron populations 1.70176 1.08936 1.30346 1.25383 1.27129 0.95842 1.04971 0.92431 0.85043 0.79410 0.75310 0.79476 1.17841 1.18479 1.18153 1.20299 0.95468 0.89952 1.38862 0.88397 1.18117 0.86856 0.91823 0.87964 1.68229 1.07826 1.28166 1.21338 1.19409 0.84326 0.87902 0.91318 1.84604 1.16046 1.96068 1.33576 1.21351 0.92520 0.99376 1.25902 1.17125 0.90318 0.79106 0.95077 1.91414 1.82010 1.44918 1.92910 1.21067 0.96290 0.94327 1.29512 1.19829 0.88184 0.92019 0.71167 1.92926 1.93026 1.79914 1.53440 1.92918 1.85448 1.88561 1.52465 0.89955 0.72849 0.83650 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.45 11.49 21.84 0.25 -37.20 14 2 C 0.02 1.05 5.49 85.29 0.47 1.52 14 3 Si 0.99 36.72 29.56 68.60 2.03 38.74 14 4 H -0.26 -9.38 7.11 99.48 0.71 -8.68 14 5 H -0.26 -9.23 7.11 99.48 0.71 -8.53 14 6 H -0.26 -8.99 7.11 99.48 0.71 -8.29 14 7 C -0.42 -21.96 8.15 23.47 0.19 -21.77 14 8 H 0.10 5.02 5.54 -2.91 -0.02 5.00 14 9 C 0.27 14.73 6.52 40.16 0.26 14.99 14 10 N -0.53 -28.70 7.92 -302.52 -2.40 -31.10 14 11 C 0.36 16.98 7.74 84.99 0.66 17.63 14 12 O -0.49 -19.73 13.55 -89.30 -1.21 -20.94 14 13 C -0.37 -15.66 10.05 22.73 0.23 -15.44 14 14 C 0.21 9.08 7.31 22.53 0.16 9.25 14 15 F -0.13 -5.04 16.32 44.97 0.73 -4.31 14 16 C -0.41 -19.30 5.45 -19.22 -0.10 -19.40 14 17 C 0.34 14.19 4.92 71.24 0.35 14.54 14 18 F -0.21 -9.25 16.01 44.97 0.72 -8.53 14 19 F -0.21 -9.11 16.06 44.97 0.72 -8.39 14 20 H 0.29 13.21 8.29 -92.71 -0.77 12.45 14 21 H 0.41 11.74 9.06 -74.05 -0.67 11.06 14 22 H 0.15 5.31 8.06 -2.91 -0.02 5.29 14 23 H 0.13 4.45 7.22 -2.39 -0.02 4.44 14 Total: -1.00 -61.34 226.05 3.69 -57.65 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.62 Total: 12.75 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 2.22 Total: 1.32 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -2.15 Total: -68.29 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.21 Total: -20.94 kcal Atomic # 9 Polarization: -23.41 SS G_CDS: 2.18 Total: -21.23 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.74 kcal Total: -61.34 3.69 -57.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238695401.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.283 kcal (2) G-P(sol) polarization free energy of solvation -61.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds