Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86801 * 120.00363 * 2 1 4 4 H 1.48496 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46912 * 300.00462 * 3 2 1 6 6 H 1.48504 * 109.46617 * 60.00495 * 3 2 1 7 7 C 1.39920 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99616 * 159.52169 * 7 2 1 9 9 C 1.41085 * 120.00064 * 339.52977 * 7 2 1 10 10 C 1.41514 * 120.65892 * 321.07760 * 9 7 2 11 11 O 1.35389 * 119.92227 * 359.97438 * 10 9 7 12 12 N 1.32057 * 120.14661 * 180.02562 * 10 9 7 13 13 C 1.32272 * 121.72113 * 359.97118 * 12 10 9 14 14 F 1.35099 * 119.31622 * 180.02562 * 13 12 10 15 15 C 1.38974 * 121.35642 * 0.02562 * 13 12 10 16 16 C 1.36905 * 119.69108 * 0.02562 * 15 13 12 17 17 C 1.50701 * 120.79832 * 179.97438 * 16 15 13 18 18 F 1.39901 * 109.46947 * 120.02610 * 17 16 15 19 19 F 1.39902 * 109.47224 * 240.02662 * 17 16 15 20 20 H 0.97006 * 119.99880 * 359.97438 * 1 2 3 21 21 H 0.96702 * 114.00431 * 272.34245 * 11 10 9 22 22 H 1.07999 * 120.15420 * 179.97438 * 15 13 12 23 23 H 1.08999 * 109.46908 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7029 1.3462 -0.0006 5 1 1.8842 2.3964 -1.2124 6 1 1.8843 2.3963 1.2126 7 6 2.0084 -1.2118 -0.0005 8 1 3.0372 -1.2412 -0.3278 9 6 1.3697 -2.3952 0.4262 10 6 0.4804 -2.3786 1.5269 11 8 0.2368 -1.2185 2.1809 12 7 -0.1115 -3.4924 1.9181 13 6 0.1010 -4.6452 1.3054 14 9 -0.5308 -5.7550 1.7461 15 6 0.9609 -4.7382 0.2176 16 6 1.6055 -3.6184 -0.2350 17 6 2.5437 -3.6908 -1.4121 18 9 2.0804 -2.8504 -2.4301 19 9 3.8217 -3.2822 -1.0157 20 1 -0.4850 0.8401 0.0004 21 1 0.8615 -1.0307 2.8948 22 1 1.1206 -5.6896 -0.2680 23 1 2.5876 -4.7162 -1.7791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238695411.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -177.513242 kcal Electronic energy + Delta-G solvation = -16517.973862 eV Core-core repulsion = 13108.892469 eV Total energy + Delta-G solvation = -3409.081393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.64223 -49.50386 -47.63791 -40.69282 -37.46652 -35.79012 -33.74831 -31.26589 -28.04634 -26.62027 -23.88552 -22.73377 -19.75827 -19.50083 -18.72299 -17.93398 -17.84517 -17.08002 -16.92847 -16.49055 -16.45932 -15.72312 -15.24020 -14.60540 -14.44676 -14.17322 -14.04700 -13.49145 -13.24347 -13.12732 -12.86139 -12.65540 -12.17795 -11.96329 -11.92103 -11.07609 -10.62889 -10.24734 -9.37372 -8.81236 -6.55365 0.36910 0.47702 1.41628 1.45544 1.57110 2.18728 2.51762 2.74284 3.12150 3.23516 3.46148 3.72833 4.14941 4.29395 4.40326 4.67988 4.88153 4.97357 5.19860 5.41838 5.84776 6.15053 6.33853 6.65542 7.11395 7.23335 8.19340 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.013093 C = 0.009344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.932288 B = 2137.965659 C = 2995.725920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.051 3.949 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.094 0.906 9 C 0.057 3.943 10 C 0.253 3.747 11 O -0.461 6.461 12 N -0.532 5.532 13 C 0.140 3.860 14 F -0.140 7.140 15 C -0.102 4.102 16 C -0.245 4.245 17 C 0.338 3.662 18 F -0.213 7.213 19 F -0.213 7.213 20 H 0.294 0.706 21 H 0.382 0.618 22 H 0.169 0.831 23 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -2.119 -1.917 6.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.172 4.172 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.112 0.888 9 C 0.050 3.950 10 C 0.066 3.934 11 O -0.265 6.265 12 N -0.257 5.257 13 C -0.009 4.009 14 F -0.120 7.120 15 C -0.123 4.123 16 C -0.252 4.252 17 C 0.285 3.715 18 F -0.195 7.195 19 F -0.195 7.195 20 H 0.105 0.895 21 H 0.238 0.762 22 H 0.187 0.813 23 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.220 -1.931 -1.636 4.921 hybrid contribution 0.600 0.615 0.014 0.859 sum 4.820 -1.317 -1.622 5.254 Atomic orbital electron populations 1.69787 1.09539 1.31644 1.28276 1.26654 0.95041 1.04279 0.91211 0.85184 0.79593 0.76152 0.79084 1.17842 1.19445 1.18412 1.19724 0.99552 0.91786 1.37002 0.88835 1.18576 0.90888 0.94145 0.91353 1.18868 0.98326 0.82985 0.93194 1.84812 1.56809 1.34118 1.50776 1.65715 1.25609 0.99565 1.34800 1.17238 1.02841 0.81382 0.99413 1.91433 1.81940 1.48479 1.90142 1.20988 0.95881 1.00079 0.95309 1.20428 1.08057 0.94998 1.01741 1.20292 0.75813 0.93091 0.82323 1.92950 1.89042 1.76154 1.61321 1.92917 1.41934 1.92917 1.91714 0.89471 0.76232 0.81319 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -38.72 11.30 21.83 0.25 -38.47 14 2 C 0.05 2.36 4.41 85.24 0.38 2.74 14 3 Si 0.98 35.52 29.61 68.60 2.03 37.56 14 4 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 5 H -0.27 -9.59 7.11 99.48 0.71 -8.89 14 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 14 7 C -0.45 -22.13 7.55 23.38 0.18 -21.95 14 8 H 0.09 4.50 6.58 -2.91 -0.02 4.48 14 9 C 0.06 2.84 5.36 -21.09 -0.11 2.72 14 10 C 0.25 12.91 7.27 85.47 0.62 13.53 14 11 O -0.46 -22.13 10.51 -86.81 -0.91 -23.04 14 12 N -0.53 -27.34 10.39 -307.91 -3.20 -30.54 14 13 C 0.14 6.47 8.41 84.80 0.71 7.19 14 14 F -0.14 -6.05 17.28 44.97 0.78 -5.28 14 15 C -0.10 -4.03 9.65 22.13 0.21 -3.82 14 16 C -0.24 -10.54 5.41 -19.49 -0.11 -10.65 14 17 C 0.34 12.15 5.05 71.24 0.36 12.51 14 18 F -0.21 -8.78 16.66 44.97 0.75 -8.03 14 19 F -0.21 -8.10 15.86 44.97 0.71 -7.38 14 20 H 0.29 13.47 8.30 -92.70 -0.77 12.70 14 21 H 0.38 14.65 9.06 -74.06 -0.67 13.98 14 22 H 0.17 4.92 7.98 -2.91 -0.02 4.89 14 23 H 0.16 3.83 7.92 -2.39 -0.02 3.81 14 Total: -1.00 -61.83 225.86 3.27 -58.56 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.62 Total: 14.34 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 2.24 Total: 2.28 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -2.95 Total: -69.01 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.91 Total: -23.04 kcal Atomic # 9 Polarization: -22.93 SS G_CDS: 2.24 Total: -20.69 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.56 kcal Total: -61.83 3.27 -58.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238695411.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.955 kcal (2) G-P(sol) polarization free energy of solvation -61.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds