Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86798 * 119.99553 * 2 1 4 4 H 1.48505 * 109.47343 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47156 * 120.00313 * 3 2 1 6 6 H 1.48504 * 109.47350 * 240.00082 * 3 2 1 7 7 C 1.40019 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99958 * 155.02085 * 7 2 1 9 9 C 1.41568 * 119.99369 * 335.02252 * 7 2 1 10 10 C 1.41054 * 120.99067 * 334.69145 * 9 7 2 11 11 C 1.37932 * 118.96535 * 179.75282 * 10 9 7 12 12 F 1.35104 * 119.48618 * 180.25091 * 11 10 9 13 13 N 1.32260 * 121.02693 * 0.53934 * 11 10 9 14 14 C 1.32411 * 122.20230 * 359.73662 * 13 11 10 15 15 O 1.35708 * 119.54198 * 179.97438 * 14 13 11 16 16 C 1.38395 * 120.90994 * 359.97373 * 14 13 11 17 17 C 1.50706 * 120.56580 * 180.02562 * 16 14 13 18 18 F 1.39905 * 109.46913 * 119.97851 * 17 16 14 19 19 F 1.39902 * 109.47110 * 239.97868 * 17 16 14 20 20 H 0.96995 * 119.99245 * 174.69494 * 1 2 3 21 21 H 1.08000 * 120.51781 * 0.02562 * 10 9 7 22 22 H 0.96695 * 114.00000 * 269.97743 * 15 14 13 23 23 H 1.08996 * 109.47203 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0952 1.6966 -1.2125 7 6 2.0078 -1.2125 -0.0005 8 1 3.0119 -1.2560 -0.3955 9 6 1.3992 -2.3814 0.5167 10 6 0.3736 -2.3001 1.4816 11 6 -0.1938 -3.4655 1.9532 12 9 -1.1804 -3.3997 2.8739 13 7 0.2169 -4.6466 1.5224 14 6 1.1796 -4.7737 0.6222 15 8 1.5591 -6.0126 0.2188 16 6 1.8041 -3.6606 0.0872 17 6 2.8986 -3.8142 -0.9374 18 9 2.5220 -3.1719 -2.1218 19 9 4.0776 -3.2400 -0.4500 20 1 -0.4849 -0.8365 -0.0777 21 1 0.0348 -1.3402 1.8423 22 1 2.2705 -6.3980 0.7483 23 1 3.0650 -4.8730 -1.1353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238695619.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = -193.327293 kcal Electronic energy + Delta-G solvation = -16454.226854 eV Core-core repulsion = 13044.459713 eV Total energy + Delta-G solvation = -3409.767142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.97466 -49.71473 -47.70045 -40.97051 -38.18232 -36.28476 -33.29080 -31.17530 -28.48223 -26.54608 -23.94092 -23.08036 -20.80171 -19.21980 -18.94323 -18.11929 -17.95786 -17.71714 -17.14093 -16.84321 -15.99426 -15.82959 -15.22486 -14.88246 -14.61854 -14.41500 -14.12359 -13.86074 -13.49690 -13.30607 -12.93013 -12.65307 -12.09333 -11.88509 -11.77764 -11.25421 -10.52506 -10.46592 -9.84496 -9.48672 -7.03171 0.03922 0.49455 1.49696 1.57982 1.80313 2.22082 2.29011 2.40832 2.99394 3.09627 3.33459 3.57448 3.88057 4.26955 4.35098 4.42761 4.81418 4.84794 5.17567 5.39825 5.65493 5.75621 6.14921 6.44348 6.66744 6.90646 7.69916 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.013338 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.962479 B = 2098.770848 C = 3111.500028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.006 3.994 3 Si 1.117 2.883 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.254 1.254 7 C -0.480 4.480 8 H 0.097 0.903 9 C 0.124 3.876 10 C -0.302 4.302 11 C 0.332 3.668 12 F -0.130 7.130 13 N -0.647 5.647 14 C 0.399 3.601 15 O -0.483 6.483 16 C -0.373 4.373 17 C 0.343 3.657 18 F -0.217 7.217 19 F -0.214 7.214 20 H 0.289 0.711 21 H 0.122 0.878 22 H 0.420 0.580 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -2.184 -0.534 6.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.215 4.215 3 Si 0.932 3.068 4 H -0.191 1.191 5 H -0.180 1.180 6 H -0.178 1.178 7 C -0.508 4.508 8 H 0.115 0.885 9 C 0.116 3.884 10 C -0.327 4.327 11 C 0.187 3.813 12 F -0.109 7.109 13 N -0.379 5.379 14 C 0.223 3.777 15 O -0.293 6.293 16 C -0.381 4.381 17 C 0.289 3.711 18 F -0.198 7.198 19 F -0.195 7.195 20 H 0.102 0.898 21 H 0.140 0.860 22 H 0.281 0.719 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.010 -1.255 -0.562 5.196 hybrid contribution 0.214 -1.202 0.290 1.255 sum 5.225 -2.457 -0.272 5.780 Atomic orbital electron populations 1.70561 1.09068 1.33950 1.25991 1.28789 0.95479 1.07929 0.89322 0.83012 0.74944 0.69089 0.79779 1.19050 1.18025 1.17792 1.21162 1.03313 0.93737 1.32563 0.88480 1.17519 0.89170 0.92900 0.88771 1.21640 1.07689 0.96903 1.06451 1.17486 0.86520 0.89566 0.87754 1.91500 1.59119 1.96748 1.63543 1.66088 1.22371 1.27286 1.22111 1.17883 0.87887 0.84417 0.87498 1.84656 1.59463 1.28503 1.56726 1.21117 1.10743 0.94010 1.12217 1.19985 0.78665 0.94365 0.78053 1.92927 1.91864 1.85507 1.49545 1.92911 1.50018 1.88019 1.88569 0.89773 0.86011 0.71873 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.50 12.37 21.84 0.27 -38.23 14 2 C 0.01 0.29 4.99 85.29 0.43 0.72 14 3 Si 1.12 38.76 30.00 68.60 2.06 40.82 14 4 H -0.27 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.26 -8.33 7.11 99.48 0.71 -7.63 14 6 H -0.25 -8.17 7.11 99.48 0.71 -7.46 14 7 C -0.48 -23.51 7.89 23.52 0.19 -23.32 14 8 H 0.10 4.69 6.28 -2.91 -0.02 4.67 14 9 C 0.12 6.16 5.30 -21.12 -0.11 6.05 14 10 C -0.30 -15.05 7.99 22.89 0.18 -14.87 14 11 C 0.33 16.09 8.39 84.56 0.71 16.80 14 12 F -0.13 -5.94 17.28 44.97 0.78 -5.16 14 13 N -0.65 -30.47 10.37 -310.45 -3.22 -33.69 14 14 C 0.40 16.99 7.71 84.64 0.65 17.64 14 15 O -0.48 -15.75 12.33 -90.28 -1.11 -16.86 14 16 C -0.37 -16.67 5.45 -19.18 -0.10 -16.78 14 17 C 0.34 13.15 4.94 71.24 0.35 13.50 14 18 F -0.22 -9.27 16.62 44.97 0.75 -8.52 14 19 F -0.21 -8.38 15.82 44.97 0.71 -7.67 14 20 H 0.29 15.14 6.62 -92.71 -0.61 14.53 14 21 H 0.12 6.17 6.58 -2.91 -0.02 6.15 14 22 H 0.42 8.65 9.06 -74.06 -0.67 7.98 14 23 H 0.15 4.28 7.01 -2.39 -0.02 4.26 14 Total: -1.00 -58.74 224.32 3.30 -55.44 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.78 Total: 14.13 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 2.29 Total: -0.26 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -2.95 Total: -71.92 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.11 Total: -16.86 kcal Atomic # 9 Polarization: -23.59 SS G_CDS: 2.24 Total: -21.35 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.06 Total: 40.82 kcal Total: -58.74 3.30 -55.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238695619.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.888 kcal (2) G-P(sol) polarization free energy of solvation -58.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds