Wall clock time and date at job start Mon Mar 30 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30776 * 1 3 3 Si 1.86799 * 119.99703 * 2 1 4 4 H 1.48500 * 109.47410 * 274.98389 * 3 2 1 5 5 H 1.48501 * 109.47084 * 34.98727 * 3 2 1 6 6 H 1.48501 * 109.47223 * 154.98408 * 3 2 1 7 7 C 1.40027 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00614 * 186.27808 * 7 2 1 9 9 C 1.40972 * 120.00381 * 6.27000 * 7 2 1 10 10 N 1.33709 * 119.85165 * 353.60289 * 9 7 2 11 11 C 1.31303 * 121.59021 * 180.02562 * 10 9 7 12 12 C 1.50701 * 119.43770 * 180.02562 * 11 10 9 13 13 F 1.39897 * 109.47198 * 119.97928 * 12 11 10 14 14 F 1.39898 * 109.47092 * 239.98038 * 12 11 10 15 15 C 1.39291 * 121.12835 * 359.97438 * 11 10 9 16 16 F 1.35105 * 120.20262 * 179.97438 * 15 11 10 17 17 C 1.38875 * 119.59704 * 359.97438 * 15 11 10 18 18 C 1.38822 * 118.52287 * 359.97438 * 17 15 11 19 19 O 1.35593 * 120.56171 * 179.97438 * 18 17 15 20 20 H 0.96998 * 120.00463 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46382 * 359.97438 * 12 11 10 22 22 H 1.08002 * 120.73380 * 179.72566 * 17 15 11 23 23 H 0.96694 * 113.99845 * 90.00284 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.3838 2.1073 -1.3948 5 1 1.4957 2.6199 0.8028 6 1 3.5879 1.4122 0.5920 7 6 2.0080 -1.2126 -0.0005 8 1 3.0832 -1.2155 0.1017 9 6 1.3096 -2.4299 -0.1344 10 7 -0.0275 -2.4338 -0.1319 11 6 -0.7122 -3.5475 -0.2537 12 6 -2.2183 -3.4956 -0.2452 13 9 -2.7094 -4.0087 -1.4505 14 9 -2.7052 -4.2606 0.8201 15 6 -0.0704 -4.7760 -0.3918 16 9 -0.7935 -5.9105 -0.5154 17 6 1.3174 -4.8275 -0.4017 18 6 2.0257 -3.6406 -0.2729 19 8 3.3816 -3.6431 -0.2767 20 1 -0.4851 0.8400 -0.0004 21 1 -2.5455 -2.4623 -0.1299 22 1 1.8339 -5.7705 -0.5034 23 1 3.7726 -3.5470 -1.1559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238695712.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:32 Heat of formation + Delta-G solvation = -181.693694 kcal Electronic energy + Delta-G solvation = -16275.241216 eV Core-core repulsion = 12865.978545 eV Total energy + Delta-G solvation = -3409.262671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.13183 -49.32247 -47.99379 -40.60713 -37.76072 -35.72945 -32.34320 -32.02344 -28.42622 -26.48311 -24.01911 -22.85698 -19.86200 -19.31597 -18.82572 -18.28275 -18.03824 -17.34039 -17.02628 -16.61897 -16.25409 -15.44151 -15.18875 -14.91030 -14.52621 -14.39798 -14.02171 -13.79263 -13.57982 -13.18859 -12.87614 -12.70649 -12.33739 -12.06705 -11.51313 -11.27966 -10.34853 -10.00935 -9.66637 -8.56509 -6.66317 0.21480 0.60661 1.43765 1.49117 1.58741 2.18318 2.48981 2.59206 3.19843 3.31775 3.49906 3.61308 3.91791 4.12012 4.20979 4.48089 4.82509 4.95433 5.10490 5.28269 5.75169 6.05984 6.30409 6.61622 7.08733 7.59831 8.22698 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.010214 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.141230 B = 2740.782212 C = 3538.851765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.021 3.979 3 Si 0.996 3.004 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.416 4.416 8 H 0.107 0.893 9 C 0.190 3.810 10 N -0.455 5.455 11 C 0.044 3.956 12 C 0.331 3.669 13 F -0.203 7.203 14 F -0.204 7.204 15 C -0.091 4.091 16 F -0.156 7.156 17 C -0.108 4.108 18 C -0.024 4.024 19 O -0.486 6.486 20 H 0.291 0.709 21 H 0.148 0.852 22 H 0.147 0.853 23 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 0.794 -1.817 2.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.203 4.203 3 Si 0.815 3.185 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.446 4.446 8 H 0.125 0.875 9 C 0.066 3.934 10 N -0.170 5.170 11 C -0.104 4.104 12 C 0.276 3.724 13 F -0.184 7.184 14 F -0.185 7.185 15 C -0.116 4.116 16 F -0.135 7.135 17 C -0.132 4.132 18 C -0.074 4.074 19 O -0.295 6.295 20 H 0.102 0.898 21 H 0.165 0.835 22 H 0.165 0.835 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.474 1.600 -1.116 2.007 hybrid contribution 0.469 -0.738 -0.625 1.075 sum 0.943 0.862 -1.740 2.159 Atomic orbital electron populations 1.70112 1.09103 1.30563 1.26144 1.27124 0.95821 1.04925 0.92437 0.84960 0.79063 0.74897 0.79533 1.18507 1.19153 1.17705 1.20056 0.96192 0.89530 1.38792 0.87544 1.19331 0.87698 0.93536 0.92854 1.68429 1.07936 1.23748 1.16867 1.21971 0.96378 0.89880 1.02186 1.20213 0.87369 0.93896 0.70896 1.92944 1.88764 1.89795 1.46935 1.92945 1.88900 1.79500 1.57175 1.18041 0.90018 0.82209 1.21372 1.91335 1.77805 1.49245 1.95140 1.21453 0.91709 0.99522 1.00519 1.19184 0.83985 0.91829 1.12436 1.84660 1.14920 1.95325 1.34616 0.89835 0.83533 0.83504 0.75498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.15 11.49 21.84 0.25 -34.90 14 2 C 0.02 0.96 5.49 85.28 0.47 1.43 14 3 Si 1.00 33.44 29.56 68.60 2.03 35.46 14 4 H -0.26 -8.44 7.11 99.48 0.71 -7.74 14 5 H -0.27 -8.65 7.11 99.48 0.71 -7.94 14 6 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14 7 C -0.42 -20.13 8.93 23.37 0.21 -19.93 14 8 H 0.11 4.81 7.34 -2.91 -0.02 4.79 14 9 C 0.19 9.69 6.56 40.29 0.26 9.95 14 10 N -0.45 -23.58 7.76 -176.61 -1.37 -24.95 14 11 C 0.04 2.14 6.29 42.89 0.27 2.41 14 12 C 0.33 13.86 5.25 71.24 0.37 14.24 14 13 F -0.20 -8.42 17.05 44.97 0.77 -7.65 14 14 F -0.20 -8.53 17.05 44.97 0.77 -7.77 14 15 C -0.09 -4.29 7.17 22.68 0.16 -4.13 14 16 F -0.16 -7.15 16.44 44.97 0.74 -6.41 14 17 C -0.11 -4.75 10.10 22.56 0.23 -4.53 14 18 C -0.02 -1.11 6.76 23.18 0.16 -0.95 14 19 O -0.49 -19.08 12.65 -89.02 -1.13 -20.21 14 20 H 0.29 12.26 8.29 -92.71 -0.77 11.49 14 21 H 0.15 5.59 8.10 -2.39 -0.02 5.57 14 22 H 0.15 5.55 8.06 -2.91 -0.02 5.53 14 23 H 0.39 11.28 9.06 -74.06 -0.67 10.61 14 Total: -1.00 -57.98 230.72 4.80 -53.17 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.62 Total: 14.74 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 2.13 Total: -1.50 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -1.12 Total: -59.84 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.13 Total: -20.21 kcal Atomic # 9 Polarization: -24.10 SS G_CDS: 2.27 Total: -21.83 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 2.03 Total: 35.46 kcal Total: -57.98 4.80 -53.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238695712.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.521 kcal (2) G-P(sol) polarization free energy of solvation -57.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds