Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86807 * 120.00122 * 2 1 4 4 H 1.48496 * 109.47033 * 274.99370 * 3 2 1 5 5 H 1.48503 * 109.46804 * 34.98755 * 3 2 1 6 6 H 1.48499 * 109.46721 * 154.98657 * 3 2 1 7 7 C 1.39875 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00373 * 160.05603 * 7 2 1 9 9 C 1.41209 * 120.00101 * 340.05865 * 7 2 1 10 10 C 1.41576 * 120.61730 * 324.14820 * 9 7 2 11 11 F 1.35106 * 120.89329 * 0.02562 * 10 9 7 12 12 C 1.37999 * 118.21355 * 179.97438 * 10 9 7 13 13 C 1.39239 * 119.34932 * 0.27633 * 12 10 9 14 14 O 1.35508 * 119.39094 * 179.69707 * 13 12 10 15 15 N 1.32610 * 121.22180 * 359.42805 * 13 12 10 16 16 C 1.31493 * 121.96062 * 0.58231 * 15 13 12 17 17 C 1.50703 * 119.75335 * 179.72542 * 16 15 13 18 18 F 1.39895 * 109.47097 * 119.97989 * 17 16 15 19 19 F 1.39898 * 109.47396 * 239.98701 * 17 16 15 20 20 H 0.96999 * 119.99714 * 359.97438 * 1 2 3 21 21 H 1.07992 * 120.32454 * 180.02562 * 12 10 9 22 22 H 0.96697 * 113.99267 * 90.00204 * 14 13 12 23 23 H 1.09010 * 109.46932 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3850 2.1074 -1.3947 5 1 1.4972 2.6200 0.8028 6 1 3.5893 1.4120 0.5920 7 6 2.0084 -1.2114 -0.0005 8 1 3.0398 -1.2394 -0.3196 9 6 1.3658 -2.3978 0.4160 10 6 0.4189 -2.3737 1.4682 11 9 0.1087 -1.2183 2.0960 12 6 -0.1795 -3.5620 1.8347 13 6 0.1677 -4.7347 1.1691 14 8 -0.4148 -5.9030 1.5324 15 7 1.0540 -4.7286 0.1827 16 6 1.6542 -3.6254 -0.2070 17 6 2.6582 -3.6767 -1.3297 18 9 2.2286 -2.8553 -2.3774 19 9 3.9000 -3.2298 -0.8656 20 1 -0.4850 0.8401 0.0004 21 1 -0.9069 -3.5828 2.6326 22 1 -1.2306 -6.1014 1.0528 23 1 2.7517 -4.7024 -1.6869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238696036.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -181.980613 kcal Electronic energy + Delta-G solvation = -16540.238708 eV Core-core repulsion = 13130.963595 eV Total energy + Delta-G solvation = -3409.275113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.72746 -49.35082 -47.71223 -40.66129 -37.80827 -35.76708 -32.79942 -32.06149 -28.43888 -26.41822 -23.75206 -23.00020 -19.79729 -19.61507 -18.75684 -18.01351 -17.63113 -17.35789 -17.04209 -16.40946 -16.12588 -15.81008 -15.47110 -14.69779 -14.65282 -14.12546 -13.88097 -13.78811 -13.37279 -13.28565 -13.02953 -12.56959 -12.45410 -12.10763 -11.65291 -11.27463 -10.37493 -10.16466 -9.66808 -8.95001 -6.67760 0.19802 0.53088 1.34144 1.40294 1.50653 2.11739 2.40030 2.67403 3.05912 3.28068 3.53187 3.57422 4.16561 4.22694 4.35963 4.53762 4.86571 4.96114 5.10085 5.28798 5.62248 6.08898 6.34265 6.52059 6.91437 7.22105 8.05245 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.013299 C = 0.009454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.643268 B = 2104.983366 C = 2960.930946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.456 4.456 8 H 0.098 0.902 9 C 0.035 3.965 10 C 0.056 3.944 11 F -0.135 7.135 12 C -0.170 4.170 13 C 0.187 3.813 14 O -0.480 6.480 15 N -0.462 5.462 16 C -0.059 4.059 17 C 0.351 3.649 18 F -0.205 7.205 19 F -0.209 7.209 20 H 0.299 0.701 21 H 0.149 0.851 22 H 0.399 0.601 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -1.661 -0.744 1.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.116 0.884 9 C 0.029 3.971 10 C 0.029 3.971 11 F -0.114 7.114 12 C -0.192 4.192 13 C 0.006 3.994 14 O -0.286 6.286 15 N -0.181 5.181 16 C -0.200 4.200 17 C 0.297 3.703 18 F -0.187 7.187 19 F -0.190 7.190 20 H 0.110 0.890 21 H 0.166 0.834 22 H 0.255 0.745 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.826 -2.288 -0.740 2.543 hybrid contribution -0.656 1.703 0.294 1.849 sum 0.170 -0.585 -0.445 0.755 Atomic orbital electron populations 1.69786 1.09322 1.32185 1.30064 1.26809 0.95464 1.04927 0.91105 0.85160 0.79411 0.75398 0.79903 1.18012 1.18652 1.17827 1.19851 0.99679 0.91568 1.37235 0.88381 1.18532 0.92195 0.95177 0.91216 1.18031 1.02568 0.81318 0.95204 1.91354 1.91789 1.47964 1.80278 1.21803 1.02545 0.91103 1.03734 1.18050 0.99125 0.85397 0.96790 1.84739 1.43697 1.36607 1.63596 1.66035 1.07827 1.30732 1.13487 1.21164 1.07090 0.88859 1.02863 1.19797 0.76546 0.92726 0.81204 1.92948 1.90179 1.76914 1.58628 1.92913 1.44495 1.91824 1.89759 0.89020 0.83359 0.74450 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.83 11.09 21.82 0.24 -39.59 14 2 C 0.04 1.81 4.57 85.23 0.39 2.20 14 3 Si 0.98 37.08 29.60 68.60 2.03 39.11 14 4 H -0.26 -9.20 7.11 99.48 0.71 -8.49 14 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 6 H -0.25 -9.51 7.11 99.48 0.71 -8.80 14 7 C -0.46 -23.51 7.55 23.40 0.18 -23.34 14 8 H 0.10 4.97 6.37 -2.91 -0.02 4.95 14 9 C 0.03 1.80 5.39 -21.14 -0.11 1.69 14 10 C 0.06 2.81 6.75 23.04 0.16 2.97 14 11 F -0.14 -6.93 14.38 44.97 0.65 -6.29 14 12 C -0.17 -7.50 10.01 22.45 0.22 -7.28 14 13 C 0.19 8.10 7.74 84.82 0.66 8.76 14 14 O -0.48 -17.02 13.54 -88.10 -1.19 -18.22 14 15 N -0.46 -21.16 10.26 -294.82 -3.02 -24.19 14 16 C -0.06 -2.79 6.34 43.20 0.27 -2.52 14 17 C 0.35 14.49 5.11 71.24 0.36 14.86 14 18 F -0.21 -9.01 16.56 44.97 0.74 -8.26 14 19 F -0.21 -8.76 15.70 44.97 0.71 -8.05 14 20 H 0.30 13.54 8.30 -92.71 -0.77 12.78 14 21 H 0.15 5.62 8.06 -2.91 -0.02 5.60 14 22 H 0.40 9.87 9.06 -74.06 -0.67 9.20 14 23 H 0.15 4.85 8.11 -2.38 -0.02 4.83 14 Total: -1.00 -59.69 225.79 2.90 -56.79 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.62 Total: 11.35 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 2.13 Total: -2.66 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -2.78 Total: -63.77 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.19 Total: -18.22 kcal Atomic # 9 Polarization: -24.70 SS G_CDS: 2.10 Total: -22.60 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -59.69 2.90 -56.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238696036.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.186 kcal (2) G-P(sol) polarization free energy of solvation -59.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds