Wall clock time and date at job start Mon Mar 30 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86798 * 119.99574 * 2 1 4 4 H 1.48495 * 109.46932 * 239.99930 * 3 2 1 5 5 H 1.48500 * 109.47648 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47296 * 120.00144 * 3 2 1 7 7 C 1.39998 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.41043 * 119.99955 * 0.02562 * 7 2 1 10 10 N 1.33724 * 119.78123 * 359.97438 * 9 7 2 11 11 C 1.31266 * 121.58568 * 180.02562 * 10 9 7 12 12 C 1.50698 * 119.51310 * 179.97438 * 11 10 9 13 13 F 1.39903 * 109.47133 * 29.97806 * 12 11 10 14 14 F 1.39899 * 109.47343 * 149.97665 * 12 11 10 15 15 C 1.39595 * 120.97467 * 359.97438 * 11 10 9 16 16 O 1.35685 * 120.26843 * 180.02562 * 15 11 10 17 17 C 1.39425 * 119.46767 * 0.02562 * 15 11 10 18 18 C 1.38207 * 118.53215 * 0.02562 * 17 15 11 19 19 F 1.35101 * 120.50091 * 179.97438 * 18 17 15 20 20 H 0.96999 * 119.99997 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47270 * 269.97733 * 12 11 10 22 22 H 0.96697 * 114.00280 * 270.02284 * 16 15 11 23 23 H 1.07997 * 120.73075 * 179.72611 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0956 1.6965 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0957 1.6965 1.2125 7 6 2.0081 -1.2124 0.0005 8 1 3.0881 -1.2123 0.0001 9 6 1.3029 -2.4339 0.0005 10 7 -0.0343 -2.4288 0.0005 11 6 -0.7260 -3.5444 0.0010 12 6 -2.2318 -3.4842 0.0016 13 9 -2.6524 -2.3241 -0.6575 14 9 -2.7437 -4.6068 -0.6579 15 6 -0.0875 -4.7857 0.0011 16 8 -0.8167 -5.9300 0.0011 17 6 1.3057 -4.8403 0.0011 18 6 2.0129 -3.6529 0.0016 19 9 3.3639 -3.6594 0.0022 20 1 -0.4850 0.8400 0.0004 21 1 -2.5945 -3.4699 1.0294 22 1 -1.0284 -6.2615 0.8844 23 1 1.8208 -5.7895 0.0055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238696094.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:35 Heat of formation + Delta-G solvation = -179.732065 kcal Electronic energy + Delta-G solvation = -16325.150457 eV Core-core repulsion = 12915.972848 eV Total energy + Delta-G solvation = -3409.177608 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.73255 -49.41042 -47.74984 -40.53671 -37.85662 -35.49151 -32.75200 -31.67862 -28.43771 -26.40083 -23.90993 -22.77061 -19.81002 -19.34257 -18.66450 -18.29218 -17.79316 -17.26572 -17.03881 -16.50399 -16.20796 -15.26908 -15.04389 -14.77885 -14.50279 -14.10502 -13.95017 -13.92118 -13.52158 -12.98489 -12.83727 -12.73763 -12.27143 -12.04708 -11.57188 -11.26498 -10.30415 -9.90673 -9.61842 -8.52870 -6.68431 0.28445 0.63683 1.39752 1.48508 1.53214 2.16752 2.50302 2.82247 3.28173 3.35830 3.50572 3.69187 3.87741 4.12900 4.25791 4.61467 4.92258 4.99021 5.12751 5.25508 5.67222 5.98239 6.39234 6.59610 7.05457 7.65020 8.22789 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.011128 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.205025 B = 2515.594890 C = 3514.882564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.022 3.978 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.433 4.433 8 H 0.096 0.904 9 C 0.194 3.806 10 N -0.455 5.455 11 C 0.041 3.959 12 C 0.333 3.667 13 F -0.205 7.205 14 F -0.194 7.194 15 C -0.051 4.051 16 O -0.482 6.482 17 C -0.100 4.100 18 C -0.075 4.075 19 F -0.153 7.153 20 H 0.289 0.711 21 H 0.153 0.847 22 H 0.386 0.614 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -2.488 3.212 4.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.203 4.203 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.463 4.463 8 H 0.114 0.886 9 C 0.070 3.930 10 N -0.169 5.169 11 C -0.108 4.108 12 C 0.279 3.721 13 F -0.186 7.186 14 F -0.176 7.176 15 C -0.101 4.101 16 O -0.291 6.291 17 C -0.125 4.125 18 C -0.100 4.100 19 F -0.132 7.132 20 H 0.100 0.900 21 H 0.170 0.830 22 H 0.241 0.759 23 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.500 -1.495 2.564 3.880 hybrid contribution 0.973 -0.391 0.302 1.091 sum -1.526 -1.886 2.866 3.755 Atomic orbital electron populations 1.70168 1.08767 1.30430 1.25632 1.27046 0.95875 1.04646 0.92689 0.85075 0.78641 0.74740 0.80302 1.18392 1.18636 1.17917 1.19988 0.95378 0.90135 1.40791 0.88613 1.18985 0.88411 0.92340 0.93307 1.68490 1.06244 1.25412 1.16776 1.22671 0.96847 0.90566 1.00706 1.20190 0.87452 0.70555 0.93911 1.92968 1.90959 1.50557 1.84144 1.92990 1.87772 1.52517 1.84277 1.18293 0.88850 0.85664 1.17317 1.84861 1.72284 1.38160 1.33756 1.21445 0.93864 0.97222 0.99985 1.18775 0.77067 0.95247 1.18877 1.91284 1.29367 1.97352 1.95216 0.89961 0.82987 0.75882 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.06 11.45 21.84 0.25 -36.81 14 2 C 0.02 1.07 5.50 85.27 0.47 1.54 14 3 Si 0.99 35.95 29.56 68.60 2.03 37.98 14 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 6 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 7 C -0.43 -22.71 8.98 23.38 0.21 -22.50 14 8 H 0.10 4.79 7.41 -2.91 -0.02 4.77 14 9 C 0.19 10.46 6.56 40.24 0.26 10.73 14 10 N -0.45 -24.10 7.43 -176.56 -1.31 -25.42 14 11 C 0.04 1.88 6.61 42.97 0.28 2.16 14 12 C 0.33 12.86 5.64 71.24 0.40 13.26 14 13 F -0.20 -9.06 17.05 44.97 0.77 -8.30 14 14 F -0.19 -7.31 15.30 44.97 0.69 -6.62 14 15 C -0.05 -2.15 6.64 22.88 0.15 -2.00 14 16 O -0.48 -16.87 11.43 -90.03 -1.03 -17.90 14 17 C -0.10 -4.34 10.09 22.55 0.23 -4.11 14 18 C -0.08 -3.72 7.33 22.96 0.17 -3.55 14 19 F -0.15 -7.29 16.56 44.97 0.74 -6.54 14 20 H 0.29 13.21 8.30 -92.71 -0.77 12.44 14 21 H 0.15 4.51 8.14 -2.39 -0.02 4.49 14 22 H 0.39 9.29 9.06 -74.06 -0.67 8.62 14 23 H 0.15 5.44 8.06 -2.91 -0.02 5.41 14 Total: -1.00 -62.20 228.41 4.93 -57.27 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.62 Total: 10.82 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 2.18 Total: -4.48 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -1.06 Total: -62.23 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -1.03 Total: -17.90 kcal Atomic # 9 Polarization: -23.66 SS G_CDS: 2.20 Total: -21.46 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -62.20 4.93 -57.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238696094.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.460 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds