Wall clock time and date at job start Mon Mar 30 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46868 * 300.00251 * 3 2 1 6 6 H 1.48502 * 109.46906 * 60.00144 * 3 2 1 7 7 C 1.39907 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 158.73071 * 7 2 1 9 9 C 1.41165 * 119.99979 * 338.72501 * 7 2 1 10 10 C 1.41828 * 120.68542 * 319.42787 * 9 7 2 11 11 O 1.35538 * 120.95266 * 359.97438 * 10 9 7 12 12 C 1.38652 * 118.09920 * 180.24943 * 10 9 7 13 13 C 1.38593 * 119.32895 * 359.44174 * 12 10 9 14 14 F 1.35092 * 119.32588 * 180.29348 * 13 12 10 15 15 N 1.32415 * 121.34569 * 0.58233 * 13 12 10 16 16 C 1.31511 * 122.11168 * 359.71081 * 15 13 12 17 17 C 1.50702 * 119.75923 * 180.02562 * 16 15 13 18 18 F 1.39894 * 109.47156 * 22.39361 * 17 16 15 19 19 F 1.39892 * 109.47291 * 142.39948 * 17 16 15 20 20 H 0.96995 * 120.00619 * 359.97438 * 1 2 3 21 21 H 0.96703 * 113.99878 * 95.77499 * 11 10 9 22 22 H 1.07994 * 120.33486 * 179.72795 * 12 10 9 23 23 H 1.09005 * 109.46619 * 262.39637 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0085 -1.2116 -0.0005 8 1 3.0333 -1.2433 -0.3398 9 6 1.3748 -2.3927 0.4425 10 6 0.5242 -2.3757 1.5773 11 8 0.2995 -1.2284 2.2630 12 6 -0.0664 -3.5676 1.9686 13 6 0.1819 -4.7198 1.2394 14 9 -0.3983 -5.8798 1.6172 15 7 0.9807 -4.7079 0.1834 16 6 1.5736 -3.6101 -0.2323 17 6 2.4720 -3.6571 -1.4414 18 9 2.1389 -4.7657 -2.2270 19 9 2.3066 -2.4877 -2.1910 20 1 -0.4851 0.8400 0.0004 21 1 -0.5070 -0.7643 1.9996 22 1 -0.7170 -3.5969 2.8301 23 1 3.5102 -3.7386 -1.1196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238700050.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:29 Heat of formation + Delta-G solvation = -160.825949 kcal Electronic energy + Delta-G solvation = -16491.995829 eV Core-core repulsion = 13083.638051 eV Total energy + Delta-G solvation = -3408.357777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.01735 -47.80869 -46.02938 -38.93533 -36.09116 -33.88484 -30.78461 -30.32307 -26.65295 -24.75331 -21.89764 -21.31836 -17.91600 -17.72379 -16.85599 -16.61607 -15.95397 -15.51198 -15.19936 -14.88261 -14.79757 -14.09680 -13.40886 -12.84451 -12.81788 -12.53909 -12.38950 -12.24633 -11.77750 -11.50271 -11.38698 -10.98943 -10.62853 -10.52755 -9.63744 -9.45369 -8.68224 -8.36423 -7.75556 -7.17632 -4.81927 1.95496 2.33252 2.93934 2.97058 3.01577 3.73928 4.21288 4.36652 4.77856 4.82343 5.25930 5.27553 5.79719 5.92518 5.96528 6.27636 6.54258 6.74247 6.91878 7.19069 7.51420 7.84475 8.14024 8.36992 8.79380 8.85631 9.81938 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.012675 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.584780 B = 2208.578852 C = 3143.695367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.088 3.912 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.419 4.419 8 H 0.095 0.905 9 C 0.060 3.940 10 C 0.108 3.892 11 O -0.480 6.480 12 C -0.180 4.180 13 C 0.182 3.818 14 F -0.141 7.141 15 N -0.468 5.468 16 C -0.026 4.026 17 C 0.350 3.650 18 F -0.205 7.205 19 F -0.187 7.187 20 H 0.289 0.711 21 H 0.374 0.626 22 H 0.124 0.876 23 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 1.179 0.605 2.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.131 4.131 3 Si 0.744 3.256 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.447 4.447 8 H 0.113 0.887 9 C 0.054 3.946 10 C 0.054 3.946 11 O -0.292 6.292 12 C -0.202 4.202 13 C 0.027 3.973 14 F -0.120 7.120 15 N -0.181 5.181 16 C -0.168 4.168 17 C 0.295 3.705 18 F -0.186 7.186 19 F -0.168 7.168 20 H 0.100 0.900 21 H 0.234 0.766 22 H 0.142 0.858 23 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.380 0.401 0.427 2.451 hybrid contribution -0.663 1.389 0.263 1.561 sum 1.717 1.790 0.691 2.575 Atomic orbital electron populations 1.69635 1.08207 1.30511 1.33426 1.25806 0.94676 1.01612 0.91004 0.86040 0.81022 0.79844 0.78659 1.18078 1.19833 1.19320 1.19453 0.99563 0.90887 1.34817 0.88739 1.18376 0.92814 0.93199 0.90163 1.18537 1.00127 0.84842 0.91074 1.84605 1.48272 1.35548 1.60816 1.21724 1.03465 0.92998 1.01972 1.17054 1.01923 0.81517 0.96825 1.91439 1.82509 1.47888 1.90205 1.65818 1.07176 1.31759 1.13382 1.20897 1.06663 0.89737 0.99535 1.19587 0.97877 0.71017 0.82001 1.92930 1.94636 1.54226 1.76856 1.93015 1.97075 1.48864 1.77814 0.90047 0.76574 0.85793 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.09 10.67 55.55 0.59 -17.50 14 2 C 0.09 1.98 4.42 -17.33 -0.08 1.91 14 3 Si 0.92 17.30 29.61 -169.99 -5.03 12.26 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 7 C -0.42 -10.00 6.70 -37.85 -0.25 -10.25 14 8 H 0.09 2.14 7.33 -52.49 -0.38 1.75 14 9 C 0.06 1.49 5.31 -106.52 -0.57 0.92 14 10 C 0.11 2.57 6.27 -38.06 -0.24 2.33 14 11 O -0.48 -10.84 11.70 -18.31 -0.21 -11.05 14 12 C -0.18 -4.04 10.02 -39.30 -0.39 -4.43 14 13 C 0.18 4.30 8.40 -17.17 -0.14 4.16 14 14 F -0.14 -3.14 17.28 2.25 0.04 -3.10 14 15 N -0.47 -11.55 9.86 -9.20 -0.09 -11.64 14 16 C -0.03 -0.63 6.65 -81.83 -0.54 -1.17 14 17 C 0.35 7.32 5.30 36.01 0.19 7.51 14 18 F -0.21 -4.40 16.98 2.25 0.04 -4.36 14 19 F -0.19 -4.10 14.87 2.25 0.03 -4.07 14 20 H 0.29 5.90 8.30 -40.82 -0.34 5.56 14 21 H 0.37 7.77 7.38 45.56 0.34 8.11 14 22 H 0.12 2.43 8.06 -52.49 -0.42 2.01 14 23 H 0.11 1.80 8.14 -51.93 -0.42 1.38 14 LS Contribution 224.57 15.07 3.38 3.38 Total: -1.00 -26.67 224.57 -3.30 -29.98 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -0.03 Total: 5.14 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.03 Total: 0.97 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 0.50 Total: -29.15 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.21 Total: -11.05 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 0.11 Total: -11.53 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -26.67 -3.30 -29.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700050.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.851 kcal (2) G-P(sol) polarization free energy of solvation -26.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds