Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48500 * 109.47088 * 239.99268 * 3 2 1 5 5 H 1.48497 * 109.47698 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47201 * 119.99899 * 3 2 1 7 7 C 1.40010 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.41415 * 120.00129 * 0.02562 * 7 2 1 10 10 N 1.33752 * 119.78736 * 352.99704 * 9 7 2 11 11 C 1.31653 * 121.61565 * 179.97438 * 10 9 7 12 12 F 1.35098 * 119.48880 * 180.02562 * 11 10 9 13 13 C 1.38935 * 121.01506 * 0.02562 * 11 10 9 14 14 C 1.39354 * 119.47525 * 0.27125 * 13 11 10 15 15 O 1.35768 * 120.74938 * 179.72722 * 14 13 11 16 16 C 1.38915 * 118.49930 * 359.45886 * 14 13 11 17 17 C 1.50702 * 120.51338 * 180.26170 * 16 14 13 18 18 F 1.39900 * 109.46846 * 122.02171 * 17 16 14 19 19 F 1.39897 * 109.47477 * 242.02000 * 17 16 14 20 20 H 0.97002 * 119.99537 * 0.02562 * 1 2 3 21 21 H 1.08007 * 120.26656 * 180.02562 * 13 11 10 22 22 H 0.96704 * 113.99577 * 90.00406 * 15 14 13 23 23 H 1.08998 * 109.47419 * 2.02554 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6964 -1.2124 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0075 -1.2125 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3005 -2.4372 0.0005 10 7 -0.0296 -2.4366 0.1416 11 6 -0.7237 -3.5553 0.1462 12 9 -2.0659 -3.5045 0.2910 13 6 -0.0970 -4.7871 0.0043 14 6 1.2881 -4.8393 -0.1393 15 8 1.9277 -6.0293 -0.2742 16 6 1.9991 -3.6459 -0.1472 17 6 3.4978 -3.6492 -0.3057 18 9 3.8497 -2.8892 -1.4263 19 9 4.0888 -3.0976 0.8360 20 1 -0.4849 0.8401 -0.0004 21 1 -0.6783 -5.6974 0.0094 22 1 2.0239 -6.3224 -1.1907 23 1 3.8471 -4.6733 -0.4370 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238700223.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -159.625476 kcal Electronic energy + Delta-G solvation = -16430.528252 eV Core-core repulsion = 13022.222531 eV Total energy + Delta-G solvation = -3408.305721 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.02000 -47.86423 -45.97615 -38.89250 -36.56101 -33.71146 -30.88064 -29.93761 -26.78940 -24.52538 -22.07688 -21.03235 -18.70607 -17.39679 -16.65763 -16.24720 -16.15969 -15.69589 -15.20758 -14.97369 -14.75468 -13.77599 -13.23491 -13.17349 -12.93017 -12.49507 -12.39543 -11.85306 -11.65944 -11.57825 -11.14984 -11.11059 -10.59045 -10.41591 -9.72880 -9.53029 -8.40524 -8.13374 -7.93505 -6.77153 -4.95555 2.17476 2.39128 2.97537 3.01127 3.03602 3.76863 4.32000 4.60010 4.72470 5.03846 5.29170 5.34332 5.66200 6.07735 6.11488 6.33392 6.67863 6.82874 6.85037 7.15546 7.48445 7.89628 8.03467 8.29966 8.48965 9.49849 9.95215 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.013682 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.906641 B = 2045.982519 C = 3144.631571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.062 3.938 3 Si 0.918 3.082 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.101 0.899 9 C 0.301 3.699 10 N -0.511 5.511 11 C 0.357 3.643 12 F -0.135 7.135 13 C -0.374 4.374 14 C 0.224 3.776 15 O -0.504 6.504 16 C -0.374 4.374 17 C 0.342 3.658 18 F -0.209 7.209 19 F -0.209 7.209 20 H 0.282 0.718 21 H 0.118 0.882 22 H 0.387 0.613 23 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -3.576 -2.151 5.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.167 4.167 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.417 4.417 8 H 0.119 0.881 9 C 0.179 3.821 10 N -0.230 5.230 11 C 0.191 3.809 12 F -0.115 7.115 13 C -0.399 4.399 14 C 0.174 3.826 15 O -0.314 6.314 16 C -0.379 4.379 17 C 0.288 3.712 18 F -0.190 7.190 19 F -0.190 7.190 20 H 0.094 0.906 21 H 0.136 0.864 22 H 0.243 0.757 23 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.923 -2.544 -1.444 4.135 hybrid contribution 0.361 -0.145 -0.542 0.667 sum 3.284 -2.689 -1.986 4.686 Atomic orbital electron populations 1.70100 1.07525 1.29192 1.24568 1.26255 0.95074 1.01956 0.93428 0.86183 0.80086 0.79102 0.80578 1.18314 1.19821 1.18321 1.20008 0.95301 0.88916 1.37443 0.88141 1.17684 0.85755 0.91025 0.87643 1.68187 1.08241 1.25413 1.21165 1.18320 0.78076 0.90455 0.94043 1.91480 1.30007 1.97253 1.92738 1.21024 0.94126 0.97123 1.27674 1.17740 0.89088 0.82790 0.92952 1.84676 1.78736 1.36163 1.31779 1.21085 0.94573 0.94754 1.27538 1.19597 0.89605 0.90516 0.71465 1.92942 1.93162 1.79660 1.53224 1.92933 1.85554 1.88267 1.52241 0.90618 0.86385 0.75741 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.96 11.49 55.55 0.64 -17.32 14 2 C 0.06 1.52 5.49 -17.35 -0.10 1.42 14 3 Si 0.92 18.12 29.56 -169.99 -5.02 13.09 14 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 14 7 C -0.39 -10.12 8.15 -37.71 -0.31 -10.43 14 8 H 0.10 2.53 5.55 -52.48 -0.29 2.24 14 9 C 0.30 8.02 6.52 -85.01 -0.55 7.47 14 10 N -0.51 -14.06 7.91 -11.51 -0.09 -14.15 14 11 C 0.36 8.92 8.40 -17.37 -0.15 8.77 14 12 F -0.14 -3.20 17.29 2.25 0.04 -3.17 14 13 C -0.37 -8.33 10.06 -38.91 -0.39 -8.72 14 14 C 0.22 4.80 6.73 -38.92 -0.26 4.54 14 15 O -0.50 -8.60 12.41 -19.01 -0.24 -8.84 14 16 C -0.37 -8.77 5.45 -103.56 -0.56 -9.33 14 17 C 0.34 7.04 4.91 36.01 0.18 7.22 14 18 F -0.21 -4.42 16.01 2.25 0.04 -4.39 14 19 F -0.21 -4.56 16.07 2.25 0.04 -4.52 14 20 H 0.28 6.55 8.29 -40.82 -0.34 6.21 14 21 H 0.12 2.33 8.06 -52.48 -0.42 1.91 14 22 H 0.39 4.48 9.06 45.56 0.41 4.90 14 23 H 0.10 1.64 7.09 -51.93 -0.37 1.27 14 LS Contribution 225.84 15.07 3.40 3.40 Total: -1.00 -29.36 225.84 -3.15 -32.51 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 0.20 Total: 2.44 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.14 Total: 0.94 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.55 Total: -31.47 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.24 Total: -8.84 kcal Atomic # 9 Polarization: -12.19 SS G_CDS: 0.11 Total: -12.08 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.36 -3.15 -32.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700223.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.117 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds