Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48500 * 109.47088 * 239.99268 * 3 2 1 5 5 H 1.48497 * 109.47698 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47201 * 119.99899 * 3 2 1 7 7 C 1.40010 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.41415 * 120.00129 * 0.02562 * 7 2 1 10 10 N 1.33752 * 119.78736 * 352.99704 * 9 7 2 11 11 C 1.31653 * 121.61565 * 179.97438 * 10 9 7 12 12 F 1.35098 * 119.48880 * 180.02562 * 11 10 9 13 13 C 1.38935 * 121.01506 * 0.02562 * 11 10 9 14 14 C 1.39354 * 119.47525 * 0.27125 * 13 11 10 15 15 O 1.35768 * 120.74938 * 179.72722 * 14 13 11 16 16 C 1.38915 * 118.49930 * 359.45886 * 14 13 11 17 17 C 1.50702 * 120.51338 * 180.26170 * 16 14 13 18 18 F 1.39900 * 109.46846 * 122.02171 * 17 16 14 19 19 F 1.39897 * 109.47477 * 242.02000 * 17 16 14 20 20 H 0.97002 * 119.99537 * 0.02562 * 1 2 3 21 21 H 1.08007 * 120.26656 * 180.02562 * 13 11 10 22 22 H 0.96704 * 113.99577 * 90.00406 * 15 14 13 23 23 H 1.08998 * 109.47419 * 2.02554 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6964 -1.2124 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0075 -1.2125 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3005 -2.4372 0.0005 10 7 -0.0296 -2.4366 0.1416 11 6 -0.7237 -3.5553 0.1462 12 9 -2.0659 -3.5045 0.2910 13 6 -0.0970 -4.7871 0.0043 14 6 1.2881 -4.8393 -0.1393 15 8 1.9277 -6.0293 -0.2742 16 6 1.9991 -3.6459 -0.1472 17 6 3.4978 -3.6492 -0.3057 18 9 3.8497 -2.8892 -1.4263 19 9 4.0888 -3.0976 0.8360 20 1 -0.4849 0.8401 -0.0004 21 1 -0.6783 -5.6974 0.0094 22 1 2.0239 -6.3224 -1.1907 23 1 3.8471 -4.6733 -0.4370 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238700223.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -180.310884 kcal Electronic energy + Delta-G solvation = -16431.425239 eV Core-core repulsion = 13022.222531 eV Total energy + Delta-G solvation = -3409.202708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.74262 -49.66666 -47.63343 -40.62504 -38.18015 -35.52932 -32.67346 -31.72282 -28.61377 -26.27037 -23.85687 -22.81078 -20.40850 -19.18067 -18.29890 -17.91039 -17.87032 -17.43337 -16.93192 -16.70829 -16.60243 -15.42589 -14.90556 -14.84681 -14.59705 -14.31944 -14.05985 -13.66468 -13.34882 -13.23036 -12.88076 -12.79352 -12.24271 -12.02039 -11.34879 -11.28246 -10.19758 -9.99886 -9.79689 -8.57784 -6.86383 0.34961 0.63985 1.36290 1.47729 1.50268 2.14016 2.52095 2.94975 3.13767 3.32412 3.48351 3.65287 4.01916 4.36096 4.43287 4.60089 4.93546 5.03262 5.11622 5.38431 5.71456 5.98973 6.34315 6.59330 6.82637 7.62454 8.18277 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.013682 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.906641 B = 2045.982519 C = 3144.631571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.020 3.980 3 Si 0.990 3.010 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.421 4.421 8 H 0.101 0.899 9 C 0.274 3.726 10 N -0.553 5.553 11 C 0.335 3.665 12 F -0.136 7.136 13 C -0.367 4.367 14 C 0.242 3.758 15 O -0.492 6.492 16 C -0.390 4.390 17 C 0.342 3.658 18 F -0.214 7.214 19 F -0.218 7.218 20 H 0.289 0.711 21 H 0.146 0.854 22 H 0.417 0.583 23 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -4.497 -2.493 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.204 4.204 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.450 4.450 8 H 0.119 0.881 9 C 0.152 3.848 10 N -0.273 5.273 11 C 0.170 3.830 12 F -0.115 7.115 13 C -0.392 4.392 14 C 0.191 3.809 15 O -0.306 6.306 16 C -0.396 4.396 17 C 0.288 3.712 18 F -0.196 7.196 19 F -0.200 7.200 20 H 0.100 0.900 21 H 0.164 0.836 22 H 0.278 0.722 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.045 -3.511 -1.810 5.653 hybrid contribution -0.015 -0.058 -0.451 0.455 sum 4.030 -3.569 -2.261 5.838 Atomic orbital electron populations 1.70179 1.09143 1.30447 1.25934 1.27175 0.95780 1.05193 0.92287 0.85135 0.78778 0.74659 0.80624 1.17726 1.18535 1.17978 1.20263 0.95473 0.89919 1.39356 0.88105 1.18127 0.85935 0.92687 0.88063 1.68059 1.09216 1.27136 1.22928 1.18667 0.78271 0.91217 0.94799 1.91469 1.29935 1.97303 1.92819 1.21304 0.94897 0.96962 1.26030 1.17631 0.88667 0.83637 0.90988 1.84616 1.77800 1.33741 1.34433 1.21438 0.96413 0.94599 1.27148 1.19956 0.88029 0.92327 0.70854 1.92925 1.93025 1.80154 1.53466 1.92909 1.85494 1.88666 1.52913 0.90020 0.83607 0.72247 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.08 11.49 21.83 0.25 -38.83 14 2 C 0.02 1.01 5.49 85.28 0.47 1.48 14 3 Si 0.99 37.23 29.56 68.60 2.03 39.26 14 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 14 5 H -0.26 -9.19 7.11 99.48 0.71 -8.48 14 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 14 7 C -0.42 -22.30 8.15 23.48 0.19 -22.11 14 8 H 0.10 5.13 5.55 -2.91 -0.02 5.11 14 9 C 0.27 14.76 6.52 40.16 0.26 15.02 14 10 N -0.55 -31.03 7.91 -190.34 -1.51 -32.54 14 11 C 0.33 16.73 8.40 84.89 0.71 17.44 14 12 F -0.14 -6.48 17.29 44.97 0.78 -5.70 14 13 C -0.37 -15.61 10.06 22.71 0.23 -15.39 14 14 C 0.24 9.70 6.73 22.70 0.15 9.86 14 15 O -0.49 -14.56 12.41 -90.95 -1.13 -15.69 14 16 C -0.39 -17.81 5.45 -19.18 -0.10 -17.91 14 17 C 0.34 13.33 4.91 71.24 0.35 13.68 14 18 F -0.21 -8.78 16.01 44.97 0.72 -8.06 14 19 F -0.22 -9.26 16.07 44.97 0.72 -8.53 14 20 H 0.29 13.73 8.29 -92.71 -0.77 12.96 14 21 H 0.15 5.30 8.06 -2.91 -0.02 5.27 14 22 H 0.42 7.46 9.06 -74.05 -0.67 6.79 14 23 H 0.15 4.26 7.09 -2.39 -0.02 4.24 14 Total: -1.00 -64.05 225.84 4.75 -59.30 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.62 Total: 8.72 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 2.26 Total: 2.07 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.25 Total: -71.37 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.13 Total: -15.69 kcal Atomic # 9 Polarization: -24.51 SS G_CDS: 2.22 Total: -22.29 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -64.05 4.75 -59.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700223.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.011 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds