Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86806 * 120.00021 * 2 1 4 4 H 1.48504 * 109.46977 * 270.00551 * 3 2 1 5 5 H 1.48500 * 109.46890 * 30.00337 * 3 2 1 6 6 H 1.48501 * 109.47149 * 150.00101 * 3 2 1 7 7 C 1.40024 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00136 * 161.08097 * 7 2 1 9 9 C 1.41412 * 120.00101 * 341.07031 * 7 2 1 10 10 C 1.41103 * 121.02145 * 323.94349 * 9 7 2 11 11 F 1.35096 * 120.69415 * 0.03875 * 10 9 7 12 12 C 1.38849 * 118.61194 * 180.25569 * 10 9 7 13 13 O 1.35758 * 119.65407 * 179.78587 * 12 10 9 14 14 N 1.32288 * 120.68457 * 359.50444 * 12 10 9 15 15 C 1.32138 * 122.28393 * 0.25572 * 14 12 10 16 16 C 1.36491 * 121.32362 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.43080 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47162 * 22.26275 * 17 16 15 19 19 F 1.39901 * 109.47079 * 142.26601 * 17 16 15 20 20 H 0.96996 * 119.99777 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99619 * 269.72449 * 13 12 10 22 22 H 1.08001 * 119.33597 * 179.97438 * 15 14 12 23 23 H 1.09001 * 109.47239 * 262.26161 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4890 2.0465 -1.4001 5 1 1.4391 2.6527 0.7001 6 1 3.5392 1.4402 0.7000 7 6 2.0077 -1.2127 -0.0005 8 1 3.0440 -1.2378 -0.3038 9 6 1.3581 -2.4044 0.3962 10 6 0.4002 -2.4001 1.4323 11 9 0.0801 -1.2534 2.0708 12 6 -0.2031 -3.5999 1.7850 13 8 -1.1244 -3.6210 2.7819 14 7 0.1065 -4.7218 1.1560 15 6 0.9948 -4.7608 0.1785 16 6 1.6447 -3.6341 -0.2351 17 6 2.6538 -3.7016 -1.3523 18 9 2.4096 -4.8363 -2.1333 19 9 2.5461 -2.5559 -2.1478 20 1 -0.4849 0.8400 0.0004 21 1 -0.7507 -3.7803 3.6594 22 1 1.2116 -5.7034 -0.3021 23 1 3.6579 -3.7590 -0.9320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238703457.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = -182.394226 kcal Electronic energy + Delta-G solvation = -16565.563624 eV Core-core repulsion = 13156.270576 eV Total energy + Delta-G solvation = -3409.293048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.66289 -49.11913 -47.67109 -40.61847 -38.04364 -35.91223 -33.17821 -31.30151 -28.25819 -26.53369 -23.86796 -22.81977 -20.22836 -19.03181 -18.53880 -18.22297 -17.98659 -17.07954 -16.97004 -16.66729 -16.39235 -15.55223 -14.95793 -14.50868 -14.43241 -14.08103 -13.87890 -13.59718 -13.56956 -13.23625 -12.82838 -12.77566 -12.35438 -12.08065 -11.95573 -11.23315 -10.15856 -10.08367 -9.39627 -8.92251 -6.76491 0.21940 0.65925 1.36757 1.46272 1.53121 2.13002 2.52642 2.80035 3.03930 3.27144 3.65729 3.77973 4.10342 4.21761 4.34063 4.60296 4.89458 5.01689 5.23814 5.39736 5.76892 6.06851 6.42255 6.55635 6.79745 7.25349 8.09133 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.015126 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.219338 B = 1850.669315 C = 3047.015889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.105 3.895 10 C -0.057 4.057 11 F -0.140 7.140 12 C 0.280 3.720 13 O -0.492 6.492 14 N -0.582 5.582 15 C 0.154 3.846 16 C -0.323 4.323 17 C 0.341 3.659 18 F -0.212 7.212 19 F -0.208 7.208 20 H 0.296 0.704 21 H 0.408 0.592 22 H 0.172 0.828 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -1.380 0.680 6.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.476 4.476 8 H 0.126 0.874 9 C 0.096 3.904 10 C -0.083 4.083 11 F -0.119 7.119 12 C 0.106 3.894 13 O -0.301 6.301 14 N -0.306 5.306 15 C 0.000 4.000 16 C -0.329 4.329 17 C 0.288 3.712 18 F -0.193 7.193 19 F -0.189 7.189 20 H 0.107 0.893 21 H 0.266 0.734 22 H 0.189 0.811 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.125 -1.846 0.529 5.473 hybrid contribution 0.278 1.537 0.213 1.577 sum 5.403 -0.309 0.742 5.463 Atomic orbital electron populations 1.69793 1.09833 1.32087 1.29948 1.26932 0.95344 1.05359 0.91105 0.85099 0.79379 0.74991 0.79880 1.18160 1.19540 1.16913 1.19900 0.99601 0.90974 1.37140 0.87352 1.17761 0.89813 0.94021 0.88792 1.19189 1.06527 0.81913 1.00630 1.91291 1.91996 1.48603 1.80011 1.19175 0.89778 0.88094 0.92321 1.84720 1.32970 1.93911 1.18505 1.67090 1.20671 1.28175 1.14681 1.21756 0.89303 0.97905 0.91062 1.21029 1.11139 0.95638 1.05118 1.20023 0.99786 0.70077 0.81362 1.92899 1.96410 1.52424 1.77578 1.92966 1.97662 1.51940 1.76368 0.89297 0.73360 0.81056 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.26 11.04 21.84 0.24 -41.02 14 2 C 0.03 1.59 4.62 85.29 0.39 1.99 14 3 Si 0.99 36.07 29.60 68.60 2.03 38.10 14 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 14 6 H -0.25 -8.48 7.11 99.48 0.71 -7.77 14 7 C -0.45 -21.82 7.06 23.48 0.17 -21.66 14 8 H 0.11 4.83 7.16 -2.91 -0.02 4.81 14 9 C 0.10 5.26 5.40 -21.08 -0.11 5.14 14 10 C -0.06 -2.97 6.76 23.12 0.16 -2.81 14 11 F -0.14 -7.52 14.22 44.97 0.64 -6.88 14 12 C 0.28 13.55 7.75 84.77 0.66 14.21 14 13 O -0.49 -20.96 13.44 -90.84 -1.22 -22.18 14 14 N -0.58 -26.96 10.35 -309.94 -3.21 -30.17 14 15 C 0.15 6.48 10.49 84.24 0.88 7.36 14 16 C -0.32 -14.16 5.76 -19.55 -0.11 -14.28 14 17 C 0.34 12.43 5.27 71.24 0.38 12.81 14 18 F -0.21 -7.34 16.27 44.97 0.73 -6.61 14 19 F -0.21 -8.73 14.93 44.97 0.67 -8.06 14 20 H 0.30 14.04 8.29 -92.71 -0.77 13.28 14 21 H 0.41 12.41 9.06 -74.06 -0.67 11.74 14 22 H 0.17 5.99 7.38 -2.91 -0.02 5.96 14 23 H 0.14 4.02 8.14 -2.39 -0.02 4.00 14 Total: -1.00 -62.25 224.32 2.91 -59.34 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.62 Total: 14.70 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 2.41 Total: 2.76 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -2.97 Total: -71.19 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.22 Total: -22.18 kcal Atomic # 9 Polarization: -23.59 SS G_CDS: 2.04 Total: -21.54 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -62.25 2.91 -59.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238703457.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.050 kcal (2) G-P(sol) polarization free energy of solvation -62.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds