Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 120.00179 * 2 1 4 4 H 1.48505 * 109.47086 * 269.99994 * 3 2 1 5 5 H 1.48496 * 109.47434 * 29.99537 * 3 2 1 6 6 H 1.48496 * 109.47693 * 150.00098 * 3 2 1 7 7 C 1.39885 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00611 * 163.11817 * 7 2 1 9 9 C 1.41267 * 119.99780 * 343.12290 * 7 2 1 10 10 C 1.40760 * 120.57874 * 334.74116 * 9 7 2 11 11 N 1.31512 * 120.38889 * 180.02562 * 10 9 7 12 12 C 1.32537 * 121.77611 * 359.97438 * 11 10 9 13 13 O 1.35527 * 119.42282 * 179.97438 * 12 11 10 14 14 C 1.39633 * 121.15723 * 0.25248 * 12 11 10 15 15 F 1.35106 * 120.26815 * 179.71923 * 14 12 11 16 16 C 1.36848 * 119.46800 * 359.51707 * 14 12 11 17 17 C 1.50705 * 120.81411 * 180.20203 * 16 14 12 18 18 F 1.39896 * 109.47382 * 120.27864 * 17 16 14 19 19 F 1.39901 * 109.46880 * 240.27561 * 17 16 14 20 20 H 0.96996 * 119.99857 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.80597 * 0.02758 * 10 9 7 22 22 H 0.96697 * 114.00224 * 89.99497 * 13 12 11 23 23 H 1.09000 * 109.47199 * 0.27382 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0533 -1.2317 -0.2710 9 6 1.3476 -2.4083 0.3563 10 6 0.2140 -2.3799 1.1902 11 7 -0.3979 -3.4965 1.5194 12 6 0.0216 -4.6764 1.0853 13 8 -0.6449 -5.7971 1.4548 14 6 1.1415 -4.7855 0.2586 15 9 1.5568 -5.9980 -0.1690 16 6 1.8128 -3.6542 -0.1186 17 6 3.0224 -3.7364 -1.0136 18 9 2.7871 -3.0071 -2.1840 19 9 4.1320 -3.2045 -0.3480 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1555 -1.4356 1.5619 22 1 -1.3592 -6.0465 0.8526 23 1 3.2163 -4.7785 -1.2677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238706082.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = -188.850688 kcal Electronic energy + Delta-G solvation = -16454.488493 eV Core-core repulsion = 13044.915472 eV Total energy + Delta-G solvation = -3409.573021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.08263 -49.68827 -47.77702 -40.62567 -37.97853 -35.80833 -33.76784 -31.17252 -28.12329 -26.83865 -23.86883 -23.00020 -19.94096 -19.57390 -19.02582 -18.10219 -17.80645 -17.56918 -17.02462 -16.81078 -16.58531 -15.67641 -15.02589 -14.85710 -14.74577 -14.19059 -14.04204 -13.64689 -13.35051 -13.26513 -13.08356 -12.84465 -12.33691 -12.11194 -11.97739 -11.36237 -10.57642 -10.14997 -9.56122 -9.01245 -6.72875 0.28274 0.39104 1.38663 1.46017 1.56103 2.12502 2.37636 2.83181 3.05040 3.21709 3.33632 3.54990 3.78997 4.24517 4.31330 4.42825 4.88897 4.97929 5.02100 5.35336 5.68682 6.06527 6.28748 6.45972 6.86737 7.35069 7.97123 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.011654 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.907591 B = 2402.114417 C = 3185.701297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.039 3.961 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.255 1.255 6 H -0.256 1.256 7 C -0.426 4.426 8 H 0.096 0.904 9 C 0.075 3.925 10 C 0.055 3.945 11 N -0.468 5.468 12 C 0.094 3.906 13 O -0.481 6.481 14 C 0.114 3.886 15 F -0.135 7.135 16 C -0.317 4.317 17 C 0.340 3.660 18 F -0.207 7.207 19 F -0.209 7.209 20 H 0.307 0.693 21 H 0.161 0.839 22 H 0.389 0.611 23 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -0.178 -2.355 3.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.178 1.178 6 H -0.179 1.179 7 C -0.453 4.453 8 H 0.114 0.886 9 C 0.069 3.931 10 C -0.115 4.115 11 N -0.184 5.184 12 C -0.079 4.079 13 O -0.286 6.286 14 C 0.091 3.909 15 F -0.114 7.114 16 C -0.325 4.325 17 C 0.287 3.713 18 F -0.188 7.188 19 F -0.190 7.190 20 H 0.119 0.881 21 H 0.178 0.822 22 H 0.245 0.755 23 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.207 -0.205 -1.398 2.621 hybrid contribution 0.474 0.281 -1.007 1.148 sum 2.681 0.076 -2.405 3.603 Atomic orbital electron populations 1.69753 1.09163 1.32858 1.28928 1.26998 0.95647 1.05142 0.90488 0.85026 0.79246 0.74620 0.80094 1.18309 1.17826 1.17916 1.20103 0.98600 0.91103 1.35470 0.88630 1.18438 0.92401 0.92248 0.90045 1.22916 0.96160 0.94087 0.98325 1.66824 1.31493 0.98469 1.21585 1.18500 0.96620 0.86274 1.06459 1.84777 1.51231 1.38565 1.54075 1.17964 0.96632 0.79563 0.96732 1.91381 1.89650 1.42177 1.88218 1.20369 1.06045 0.93660 1.12396 1.19871 0.80800 0.93190 0.77482 1.92944 1.94825 1.81406 1.49608 1.92921 1.55234 1.89205 1.81659 0.88091 0.82201 0.75524 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.30 10.97 21.82 0.24 -35.06 14 2 C 0.04 1.69 5.16 85.23 0.44 2.13 14 3 Si 0.99 33.04 29.59 68.60 2.03 35.07 14 4 H -0.26 -8.43 7.11 99.48 0.71 -7.73 14 5 H -0.25 -7.83 7.11 99.48 0.71 -7.12 14 6 H -0.26 -8.55 7.11 99.48 0.71 -7.84 14 7 C -0.43 -20.49 7.92 23.41 0.19 -20.31 14 8 H 0.10 4.56 6.20 -2.91 -0.02 4.54 14 9 C 0.07 3.75 5.57 -21.19 -0.12 3.63 14 10 C 0.05 2.76 9.88 85.36 0.84 3.61 14 11 N -0.47 -23.54 10.37 -306.34 -3.18 -26.72 14 12 C 0.09 4.43 7.75 84.92 0.66 5.09 14 13 O -0.48 -19.77 13.41 -88.31 -1.18 -20.95 14 14 C 0.11 5.19 7.24 22.28 0.16 5.36 14 15 F -0.14 -5.48 16.09 44.97 0.72 -4.75 14 16 C -0.32 -14.85 5.41 -19.46 -0.11 -14.96 14 17 C 0.34 13.83 4.96 71.24 0.35 14.18 14 18 F -0.21 -8.81 16.62 44.97 0.75 -8.07 14 19 F -0.21 -8.67 15.82 44.97 0.71 -7.96 14 20 H 0.31 12.11 8.30 -92.71 -0.77 11.34 14 21 H 0.16 8.03 6.19 -2.91 -0.02 8.01 14 22 H 0.39 11.98 9.06 -74.06 -0.67 11.31 14 23 H 0.13 4.48 7.19 -2.39 -0.02 4.46 14 Total: -1.00 -55.86 225.03 3.14 -52.73 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.63 Total: 16.97 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 2.42 Total: -1.27 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -2.94 Total: -61.78 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.18 Total: -20.95 kcal Atomic # 9 Polarization: -22.96 SS G_CDS: 2.18 Total: -20.78 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Total: -55.86 3.14 -52.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238706082.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.124 kcal (2) G-P(sol) polarization free energy of solvation -55.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds