Wall clock time and date at job start Mon Mar 30 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86800 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00309 * 3 2 1 5 5 H 1.48505 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47312 * 119.99623 * 3 2 1 7 7 C 1.39878 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99995 * 161.38730 * 7 2 1 9 9 C 1.41208 * 120.00302 * 341.38193 * 7 2 1 10 10 C 1.40700 * 120.61644 * 336.31531 * 9 7 2 11 11 N 1.31463 * 120.48247 * 180.02562 * 10 9 7 12 12 C 1.32626 * 121.97339 * 359.97438 * 11 10 9 13 13 O 1.35508 * 119.39140 * 180.02562 * 12 11 10 14 14 C 1.39204 * 121.22035 * 0.27481 * 12 11 10 15 15 C 1.50699 * 120.32637 * 179.70346 * 14 12 11 16 16 F 1.39904 * 109.46974 * 119.99815 * 15 14 12 17 17 F 1.39892 * 109.47185 * 240.00157 * 15 14 12 18 18 C 1.38041 * 119.35057 * 359.47392 * 14 12 11 19 19 F 1.35102 * 120.89679 * 180.23534 * 18 14 12 20 20 H 0.97005 * 120.00349 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.75570 * 0.02562 * 10 9 7 22 22 H 0.96699 * 113.99763 * 90.00068 * 13 12 11 23 23 H 1.08996 * 109.46936 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0461 -1.2357 -0.2991 9 6 1.3579 -2.4025 0.3893 10 6 0.2270 -2.3607 1.2254 11 7 -0.3763 -3.4713 1.5872 12 6 0.0465 -4.6628 1.1865 13 8 -0.6155 -5.7739 1.5908 14 6 1.1607 -4.7934 0.3624 15 6 1.6276 -6.1577 -0.0755 16 9 1.5909 -6.2372 -1.4718 17 9 2.9372 -6.3675 0.3694 18 6 1.8311 -3.6607 -0.0537 19 9 2.9132 -3.7509 -0.8575 20 1 -0.4851 0.8401 -0.0004 21 1 -0.1481 -1.4093 1.5726 22 1 -1.3306 -6.0432 0.9981 23 1 0.9731 -6.9191 0.3488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238706167.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:47 Heat of formation + Delta-G solvation = -190.424362 kcal Electronic energy + Delta-G solvation = -16320.274195 eV Core-core repulsion = 12910.632934 eV Total energy + Delta-G solvation = -3409.641261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.16376 -49.44062 -48.00527 -40.77016 -37.93555 -35.79915 -33.37103 -31.97281 -27.55210 -27.07061 -23.66060 -23.26318 -19.79638 -19.69077 -19.06167 -18.31551 -17.86956 -17.53105 -17.08727 -16.73003 -16.37434 -15.64521 -15.12191 -15.00108 -14.90964 -14.40711 -14.01551 -13.88826 -13.35105 -13.25577 -13.14818 -12.82067 -12.43899 -12.21696 -11.78637 -11.31025 -10.40692 -10.26857 -9.80753 -8.97354 -6.64403 0.13158 0.42790 1.38042 1.46815 1.53109 2.12664 2.36962 2.74885 2.95139 3.17345 3.20842 3.46731 3.79868 4.03381 4.22810 4.62615 4.80055 4.91003 4.99702 5.45013 5.59726 6.05267 6.28901 6.46992 6.84264 7.33638 8.01612 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.035184 B = 0.009246 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.622086 B = 3027.559764 C = 3581.549226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.041 3.959 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.454 4.454 8 H 0.087 0.913 9 C 0.005 3.995 10 C 0.083 3.917 11 N -0.497 5.497 12 C 0.204 3.796 13 O -0.477 6.477 14 C -0.230 4.230 15 C 0.324 3.676 16 F -0.210 7.210 17 F -0.211 7.211 18 C 0.015 3.985 19 F -0.146 7.146 20 H 0.306 0.694 21 H 0.165 0.835 22 H 0.401 0.599 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -2.812 -0.218 2.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.179 4.179 3 Si 0.814 3.186 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.481 4.481 8 H 0.105 0.895 9 C -0.001 4.001 10 C -0.082 4.082 11 N -0.214 5.214 12 C 0.028 3.972 13 O -0.284 6.284 14 C -0.235 4.235 15 C 0.270 3.730 16 F -0.191 7.191 17 F -0.192 7.192 18 C -0.011 4.011 19 F -0.125 7.125 20 H 0.118 0.882 21 H 0.182 0.818 22 H 0.259 0.741 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.798 -2.750 0.708 2.949 hybrid contribution 0.954 0.498 -1.265 1.660 sum 0.155 -2.252 -0.556 2.325 Atomic orbital electron populations 1.69736 1.09042 1.32708 1.30364 1.26902 0.95661 1.04843 0.90518 0.85022 0.78822 0.74322 0.80405 1.18446 1.18013 1.17974 1.19770 0.98976 0.91620 1.37763 0.89517 1.18937 0.95105 0.92123 0.93912 1.22759 0.94761 0.94682 0.95987 1.66848 1.32445 0.98682 1.23429 1.17950 0.93424 0.85751 1.00046 1.84706 1.51417 1.38869 1.53440 1.21177 1.02282 0.94632 1.05401 1.20460 0.81059 0.96136 0.75322 1.92963 1.96544 1.97356 1.32240 1.92949 1.41266 1.95916 1.89085 1.17893 0.90053 0.94323 0.98795 1.91334 1.52802 1.96961 1.71380 0.88222 0.81842 0.74140 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.38 10.97 21.82 0.24 -36.14 14 2 C 0.04 1.81 5.14 85.23 0.44 2.25 14 3 Si 1.00 33.66 29.60 68.60 2.03 35.69 14 4 H -0.26 -8.75 7.11 99.48 0.71 -8.05 14 5 H -0.26 -7.94 7.11 99.48 0.71 -7.23 14 6 H -0.26 -8.52 7.11 99.48 0.71 -7.81 14 7 C -0.45 -22.78 8.83 23.40 0.21 -22.58 14 8 H 0.09 4.30 7.79 -2.91 -0.02 4.28 14 9 C 0.00 0.25 5.60 -21.13 -0.12 0.13 14 10 C 0.08 4.17 9.90 85.35 0.84 5.01 14 11 N -0.50 -23.96 10.36 -306.69 -3.18 -27.14 14 12 C 0.20 8.89 7.72 84.81 0.65 9.55 14 13 O -0.48 -16.29 12.30 -88.10 -1.08 -17.37 14 14 C -0.23 -10.24 5.40 -19.68 -0.11 -10.34 14 15 C 0.32 11.94 5.15 71.24 0.37 12.30 14 16 F -0.21 -8.07 17.12 44.97 0.77 -7.30 14 17 F -0.21 -8.34 17.14 44.97 0.77 -7.57 14 18 C 0.02 0.77 7.19 23.04 0.17 0.94 14 19 F -0.15 -7.42 16.18 44.97 0.73 -6.69 14 20 H 0.31 12.29 8.30 -92.70 -0.77 11.52 14 21 H 0.16 8.17 6.14 -2.91 -0.02 8.16 14 22 H 0.40 9.36 9.06 -74.06 -0.67 8.69 14 23 H 0.17 4.56 6.99 -2.39 -0.02 4.54 14 Total: -1.00 -58.50 228.19 3.35 -55.15 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.62 Total: 14.10 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 2.45 Total: -2.73 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -2.94 Total: -63.28 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.08 Total: -17.37 kcal Atomic # 9 Polarization: -23.83 SS G_CDS: 2.27 Total: -21.56 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Total: -58.50 3.35 -55.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238706167.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.277 kcal (2) G-P(sol) polarization free energy of solvation -58.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds