Wall clock time and date at job start Mon Mar 30 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86795 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47104 * 269.99960 * 3 2 1 5 5 H 1.48506 * 109.47106 * 29.99555 * 3 2 1 6 6 H 1.48498 * 109.47217 * 149.99918 * 3 2 1 7 7 C 1.40042 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99617 * 160.51139 * 7 2 1 9 9 C 1.41409 * 120.00036 * 340.79063 * 7 2 1 10 10 C 1.41409 * 121.01808 * 324.18850 * 9 7 2 11 11 F 1.35101 * 120.54126 * 0.02562 * 10 9 7 12 12 C 1.37923 * 118.91330 * 180.02562 * 10 9 7 13 13 N 1.32059 * 121.03353 * 359.97438 * 12 10 9 14 14 C 1.32400 * 122.28134 * 0.02562 * 13 12 10 15 15 O 1.35744 * 119.51566 * 179.97438 * 14 13 12 16 16 C 1.38330 * 120.95925 * 359.70852 * 14 13 12 17 17 C 1.50696 * 120.57820 * 180.31035 * 16 14 13 18 18 F 1.39900 * 109.46836 * 120.25036 * 17 16 14 19 19 F 1.39898 * 109.47669 * 240.25063 * 17 16 14 20 20 H 0.96998 * 119.99604 * 0.02562 * 1 2 3 21 21 H 1.07994 * 119.48549 * 179.97438 * 12 10 9 22 22 H 0.96707 * 114.00143 * 90.00358 * 15 14 13 23 23 H 1.08999 * 109.47056 * 0.25463 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4401 0.7000 7 6 2.0078 -1.2128 0.0005 8 1 3.0414 -1.2397 -0.3115 9 6 1.3597 -2.4032 0.4040 10 6 0.4005 -2.3945 1.4429 11 9 0.0819 -1.2429 2.0736 12 6 -0.2047 -3.5808 1.8018 13 7 0.0990 -4.7118 1.1915 14 6 0.9900 -4.7707 0.2139 15 8 1.2595 -5.9641 -0.3743 16 6 1.6461 -3.6330 -0.2205 17 6 2.6535 -3.7088 -1.3386 18 9 2.2403 -2.8898 -2.3948 19 9 3.9001 -3.2765 -0.8734 20 1 -0.4849 0.8401 -0.0004 21 1 -0.9383 -3.5848 2.5943 22 1 0.6982 -6.1627 -1.1363 23 1 2.7329 -4.7386 -1.6870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238708085.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:45 Heat of formation + Delta-G solvation = -184.461444 kcal Electronic energy + Delta-G solvation = -16665.115235 eV Core-core repulsion = 13255.732546 eV Total energy + Delta-G solvation = -3409.382689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.65444 -49.14240 -47.64999 -40.73989 -37.76403 -36.00464 -33.42980 -30.88786 -28.52814 -26.59468 -23.71068 -22.88523 -20.33583 -19.06190 -18.46640 -18.22853 -17.91990 -17.16026 -17.04269 -16.34919 -16.29774 -15.88512 -14.84501 -14.71481 -14.60913 -14.07298 -13.68038 -13.64217 -13.47734 -13.23070 -13.07682 -12.70021 -12.42033 -12.08355 -11.88251 -11.27207 -10.26567 -10.10319 -9.37804 -8.96761 -6.82247 0.21862 0.61789 1.33102 1.41804 1.49166 2.10971 2.47443 2.83650 3.13918 3.18543 3.56253 3.69688 4.15337 4.17881 4.40409 4.53532 4.88607 4.99606 5.10131 5.36376 5.76608 6.11884 6.38160 6.54498 6.79500 7.22317 8.05010 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.013545 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.362889 B = 2066.640724 C = 2856.763506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.040 3.960 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.461 4.461 8 H 0.093 0.907 9 C 0.109 3.891 10 C -0.044 4.044 11 F -0.141 7.141 12 C 0.102 3.898 13 N -0.577 5.577 14 C 0.347 3.653 15 O -0.487 6.487 16 C -0.344 4.344 17 C 0.341 3.659 18 F -0.214 7.214 19 F -0.218 7.218 20 H 0.299 0.701 21 H 0.169 0.831 22 H 0.415 0.585 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -2.288 -2.337 3.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.110 0.890 9 C 0.100 3.900 10 C -0.068 4.068 11 F -0.120 7.120 12 C -0.049 4.049 13 N -0.301 5.301 14 C 0.169 3.831 15 O -0.296 6.296 16 C -0.351 4.351 17 C 0.287 3.713 18 F -0.196 7.196 19 F -0.200 7.200 20 H 0.110 0.890 21 H 0.186 0.814 22 H 0.275 0.725 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.240 -2.933 -1.681 3.601 hybrid contribution 0.118 1.753 -0.463 1.817 sum 1.358 -1.180 -2.144 2.798 Atomic orbital electron populations 1.69731 1.09306 1.32216 1.29397 1.26799 0.95477 1.04830 0.91066 0.85175 0.79289 0.75391 0.80002 1.18030 1.18424 1.18067 1.19867 0.99344 0.91631 1.38069 0.88952 1.17839 0.89584 0.93475 0.89057 1.19074 1.06061 0.82758 0.98864 1.91311 1.91927 1.48510 1.80262 1.22248 0.97956 0.85831 0.98888 1.67066 1.20888 1.28310 1.13840 1.18516 0.90544 0.83623 0.90466 1.84661 1.61129 1.34219 1.49630 1.21251 1.12620 0.94319 1.06909 1.20069 0.76942 0.92741 0.81575 1.92934 1.90607 1.77317 1.58706 1.92893 1.45043 1.92288 1.89751 0.88968 0.81398 0.72513 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.68 11.04 21.84 0.24 -39.44 14 2 C 0.04 1.95 4.61 85.29 0.39 2.35 14 3 Si 0.98 37.48 29.60 68.60 2.03 39.51 14 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 14 5 H -0.26 -9.35 7.11 99.48 0.71 -8.64 14 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 14 7 C -0.46 -24.04 7.70 23.49 0.18 -23.86 14 8 H 0.09 4.80 6.51 -2.91 -0.02 4.78 14 9 C 0.11 5.65 5.41 -21.07 -0.11 5.54 14 10 C -0.04 -2.21 6.74 22.98 0.15 -2.05 14 11 F -0.14 -7.29 14.35 44.97 0.65 -6.65 14 12 C 0.10 4.57 11.15 84.58 0.94 5.51 14 13 N -0.58 -25.74 10.36 -309.19 -3.20 -28.94 14 14 C 0.35 14.73 7.71 84.63 0.65 15.38 14 15 O -0.49 -16.06 12.33 -90.68 -1.12 -17.18 14 16 C -0.34 -15.83 5.45 -19.20 -0.10 -15.93 14 17 C 0.34 13.66 5.00 71.23 0.36 14.01 14 18 F -0.21 -9.28 16.66 44.97 0.75 -8.53 14 19 F -0.22 -9.35 15.83 44.97 0.71 -8.64 14 20 H 0.30 13.63 8.29 -92.71 -0.77 12.86 14 21 H 0.17 6.40 8.06 -2.91 -0.02 6.37 14 22 H 0.41 9.07 9.06 -74.05 -0.67 8.40 14 23 H 0.15 4.51 7.01 -2.39 -0.02 4.49 14 Total: -1.00 -61.47 224.19 3.14 -58.33 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.62 Total: 10.59 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 2.46 Total: 0.94 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -2.96 Total: -68.38 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.12 Total: -17.18 kcal Atomic # 9 Polarization: -25.92 SS G_CDS: 2.11 Total: -23.81 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -61.47 3.14 -58.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238708085.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.135 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds