Wall clock time and date at job start Mon Mar 30 2020 03:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86796 * 119.99647 * 2 1 4 4 H 1.48503 * 109.46984 * 269.99584 * 3 2 1 5 5 H 1.48503 * 109.47342 * 29.99557 * 3 2 1 6 6 H 1.48498 * 109.47356 * 149.99581 * 3 2 1 7 7 C 1.40058 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99955 * 160.05826 * 7 2 1 9 9 C 1.41123 * 119.99677 * 340.33758 * 7 2 1 10 10 C 1.41346 * 121.08544 * 324.57599 * 9 7 2 11 11 F 1.35102 * 120.56156 * 0.02562 * 10 9 7 12 12 C 1.37868 * 118.86904 * 180.02562 * 10 9 7 13 13 N 1.32056 * 121.14835 * 0.02562 * 12 10 9 14 14 C 1.31858 * 122.44852 * 359.97438 * 13 12 10 15 15 C 1.50698 * 119.51857 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.46838 * 29.99885 * 15 14 13 17 17 F 1.39900 * 109.47557 * 149.99539 * 15 14 13 18 18 C 1.38489 * 120.96834 * 359.70959 * 14 13 12 19 19 O 1.35670 * 120.63214 * 180.29022 * 18 14 13 20 20 H 0.97003 * 120.00528 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.42399 * 179.97438 * 12 10 9 22 22 H 1.09003 * 109.47404 * 270.00048 * 15 14 13 23 23 H 0.96702 * 114.00089 * 270.29313 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4390 2.6527 0.6999 6 1 3.5391 1.4404 0.7001 7 6 2.0081 -1.2129 0.0005 8 1 3.0395 -1.2410 -0.3184 9 6 1.3642 -2.3992 0.4123 10 6 0.4063 -2.3867 1.4516 11 9 0.0849 -1.2324 2.0757 12 6 -0.1943 -3.5725 1.8176 13 7 0.1116 -4.7074 1.2156 14 6 0.9973 -4.7751 0.2412 15 6 1.2956 -6.1058 -0.4000 16 9 0.1560 -6.9155 -0.3454 17 9 1.6635 -5.9081 -1.7352 18 6 1.6529 -3.6401 -0.2060 19 8 2.5587 -3.7166 -1.2131 20 1 -0.4851 0.8400 -0.0004 21 1 -0.9272 -3.5733 2.6109 22 1 2.1123 -6.5915 0.1339 23 1 3.4639 -3.8826 -0.9161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238717150.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:21 Heat of formation + Delta-G solvation = -162.420256 kcal Electronic energy + Delta-G solvation = -16399.112765 eV Core-core repulsion = 12990.685854 eV Total energy + Delta-G solvation = -3408.426912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.27995 -47.26863 -46.29938 -38.87825 -35.98284 -34.20169 -30.91587 -29.83590 -26.20824 -25.27803 -21.92241 -21.25602 -18.01165 -17.52640 -16.97489 -16.84525 -16.25502 -15.39587 -15.20905 -15.11762 -14.17428 -13.72166 -13.31593 -13.17639 -12.92927 -12.64109 -12.28934 -12.04937 -11.78004 -11.69986 -11.37889 -10.93194 -10.79351 -10.48796 -9.85696 -9.46830 -8.47825 -8.05395 -7.69556 -7.13108 -4.83022 2.00483 2.39017 2.94537 2.96894 3.01561 3.73981 4.23403 4.31748 4.68337 4.89698 5.16380 5.30308 5.51605 5.71097 5.90490 6.41669 6.65142 6.79037 6.86321 7.12831 7.62741 7.97582 8.19242 8.40651 8.65474 8.99223 9.86424 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.038543 B = 0.009452 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.279477 B = 2961.618148 C = 3511.176895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.432 4.432 8 H 0.093 0.907 9 C 0.074 3.926 10 C 0.008 3.992 11 F -0.131 7.131 12 C 0.065 3.935 13 N -0.514 5.514 14 C 0.019 3.981 15 C 0.334 3.666 16 F -0.200 7.200 17 F -0.191 7.191 18 C 0.003 3.997 19 O -0.471 6.471 20 H 0.291 0.709 21 H 0.141 0.859 22 H 0.110 0.890 23 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -3.004 1.426 5.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.150 4.150 3 Si 0.743 3.257 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.461 4.461 8 H 0.111 0.889 9 C 0.065 3.935 10 C -0.016 4.016 11 F -0.110 7.110 12 C -0.089 4.089 13 N -0.229 5.229 14 C -0.117 4.117 15 C 0.279 3.721 16 F -0.181 7.181 17 F -0.172 7.172 18 C -0.047 4.047 19 O -0.276 6.276 20 H 0.102 0.898 21 H 0.158 0.842 22 H 0.127 0.873 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.003 -3.501 1.301 4.792 hybrid contribution 0.873 1.703 0.019 1.914 sum 3.876 -1.798 1.320 4.472 Atomic orbital electron populations 1.69723 1.08084 1.30846 1.29406 1.25966 0.94789 1.01870 0.92339 0.86104 0.80539 0.79621 0.79448 1.19130 1.19699 1.18126 1.19308 0.99266 0.90499 1.37041 0.88928 1.18149 0.91852 0.93528 0.89956 1.18773 1.03695 0.81978 0.97145 1.91356 1.91492 1.47832 1.80303 1.21998 0.99665 0.87143 1.00115 1.66980 1.17486 1.27779 1.10657 1.21450 0.99775 0.93185 0.97322 1.19898 0.85167 0.87723 0.79290 1.92956 1.54282 1.74459 1.96384 1.93019 1.91559 1.95740 1.36906 1.19030 1.00024 0.91622 0.94046 1.84883 1.18488 1.94079 1.30164 0.89816 0.84153 0.87286 0.78682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.36 11.04 55.55 0.61 -18.75 14 2 C 0.07 1.80 4.60 -17.32 -0.08 1.72 14 3 Si 0.92 18.00 29.60 -169.99 -5.03 12.97 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 14 7 C -0.43 -10.88 8.61 -37.81 -0.33 -11.20 14 8 H 0.09 2.19 7.91 -52.49 -0.42 1.77 14 9 C 0.07 1.89 5.44 -106.34 -0.58 1.31 14 10 C 0.01 0.21 6.74 -38.54 -0.26 -0.05 14 11 F -0.13 -3.33 14.33 2.25 0.03 -3.30 14 12 C 0.06 1.49 11.14 -17.59 -0.20 1.29 14 13 N -0.51 -11.92 9.92 -9.45 -0.09 -12.01 14 14 C 0.02 0.43 6.59 -82.49 -0.54 -0.11 14 15 C 0.33 6.24 5.64 36.00 0.20 6.44 14 16 F -0.20 -3.96 17.05 2.25 0.04 -3.92 14 17 F -0.19 -3.74 15.29 2.25 0.03 -3.71 14 18 C 0.00 0.08 6.65 -38.20 -0.25 -0.17 14 19 O -0.47 -9.93 10.95 -18.71 -0.20 -10.14 14 20 H 0.29 6.72 8.30 -40.82 -0.34 6.38 14 21 H 0.14 2.81 8.06 -52.49 -0.42 2.39 14 22 H 0.11 1.56 8.14 -51.93 -0.42 1.14 14 23 H 0.36 5.70 9.06 45.56 0.41 6.11 14 LS Contribution 226.39 15.07 3.41 3.41 Total: -1.00 -29.29 226.39 -3.22 -32.51 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.02 Total: 3.71 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.03 Total: -0.78 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.52 Total: -30.76 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.20 Total: -10.14 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 0.11 Total: -10.93 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.29 -3.22 -32.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717150.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.911 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds