Wall clock time and date at job start Mon Mar 30 2020 03:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86796 * 119.99647 * 2 1 4 4 H 1.48503 * 109.46984 * 269.99584 * 3 2 1 5 5 H 1.48503 * 109.47342 * 29.99557 * 3 2 1 6 6 H 1.48498 * 109.47356 * 149.99581 * 3 2 1 7 7 C 1.40058 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99955 * 160.05826 * 7 2 1 9 9 C 1.41123 * 119.99677 * 340.33758 * 7 2 1 10 10 C 1.41346 * 121.08544 * 324.57599 * 9 7 2 11 11 F 1.35102 * 120.56156 * 0.02562 * 10 9 7 12 12 C 1.37868 * 118.86904 * 180.02562 * 10 9 7 13 13 N 1.32056 * 121.14835 * 0.02562 * 12 10 9 14 14 C 1.31858 * 122.44852 * 359.97438 * 13 12 10 15 15 C 1.50698 * 119.51857 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.46838 * 29.99885 * 15 14 13 17 17 F 1.39900 * 109.47557 * 149.99539 * 15 14 13 18 18 C 1.38489 * 120.96834 * 359.70959 * 14 13 12 19 19 O 1.35670 * 120.63214 * 180.29022 * 18 14 13 20 20 H 0.97003 * 120.00528 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.42399 * 179.97438 * 12 10 9 22 22 H 1.09003 * 109.47404 * 270.00048 * 15 14 13 23 23 H 0.96702 * 114.00089 * 270.29313 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4390 2.6527 0.6999 6 1 3.5391 1.4404 0.7001 7 6 2.0081 -1.2129 0.0005 8 1 3.0395 -1.2410 -0.3184 9 6 1.3642 -2.3992 0.4123 10 6 0.4063 -2.3867 1.4516 11 9 0.0849 -1.2324 2.0757 12 6 -0.1943 -3.5725 1.8176 13 7 0.1116 -4.7074 1.2156 14 6 0.9973 -4.7751 0.2412 15 6 1.2956 -6.1058 -0.4000 16 9 0.1560 -6.9155 -0.3454 17 9 1.6635 -5.9081 -1.7352 18 6 1.6529 -3.6401 -0.2060 19 8 2.5587 -3.7166 -1.2131 20 1 -0.4851 0.8400 -0.0004 21 1 -0.9272 -3.5733 2.6109 22 1 2.1123 -6.5915 0.1339 23 1 3.4639 -3.8826 -0.9161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238717150.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:21 Heat of formation + Delta-G solvation = -182.801987 kcal Electronic energy + Delta-G solvation = -16399.996584 eV Core-core repulsion = 12990.685854 eV Total energy + Delta-G solvation = -3409.310730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.79393 -49.17496 -47.81983 -40.65405 -37.70690 -36.00898 -32.72380 -31.57668 -28.04168 -26.91681 -23.72438 -23.00598 -19.78545 -19.26246 -18.66385 -18.34290 -17.92242 -17.08714 -16.94096 -16.89799 -16.02630 -15.42632 -15.04865 -14.79136 -14.57653 -14.17494 -13.95843 -13.84690 -13.51820 -13.43059 -12.99929 -12.62067 -12.35040 -12.08482 -11.58484 -11.22269 -10.28252 -9.89451 -9.50175 -8.92251 -6.71488 0.21123 0.57291 1.35013 1.43515 1.51401 2.11920 2.48874 2.73923 3.11210 3.24053 3.47589 3.68150 3.89390 4.08561 4.24577 4.65760 4.84427 5.02755 5.10071 5.32655 5.79446 6.12990 6.40190 6.56545 7.04081 7.21172 8.10057 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.038543 B = 0.009452 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.279477 B = 2961.618148 C = 3511.176895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.461 4.461 8 H 0.100 0.900 9 C 0.045 3.955 10 C -0.022 4.022 11 F -0.140 7.140 12 C 0.067 3.933 13 N -0.519 5.519 14 C 0.010 3.990 15 C 0.336 3.664 16 F -0.206 7.206 17 F -0.197 7.197 18 C 0.001 3.999 19 O -0.477 6.477 20 H 0.297 0.703 21 H 0.167 0.833 22 H 0.165 0.835 23 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -3.274 1.365 6.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.490 4.490 8 H 0.118 0.882 9 C 0.037 3.963 10 C -0.046 4.046 11 F -0.119 7.119 12 C -0.087 4.087 13 N -0.234 5.234 14 C -0.126 4.126 15 C 0.282 3.718 16 F -0.188 7.188 17 F -0.178 7.178 18 C -0.049 4.049 19 O -0.285 6.285 20 H 0.108 0.892 21 H 0.184 0.816 22 H 0.181 0.819 23 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.014 -3.801 1.233 5.664 hybrid contribution 0.565 1.681 0.004 1.774 sum 4.579 -2.120 1.237 5.196 Atomic orbital electron populations 1.69773 1.09670 1.32051 1.30696 1.26903 0.95431 1.05172 0.91206 0.85058 0.79228 0.74985 0.79763 1.18304 1.19197 1.17375 1.19636 0.99817 0.91331 1.38230 0.88241 1.18593 0.92503 0.94778 0.90469 1.19051 1.05082 0.82404 0.98038 1.91315 1.91708 1.48388 1.80490 1.22384 0.99510 0.86525 1.00293 1.67107 1.17625 1.27603 1.11071 1.22035 0.98856 0.94810 0.96934 1.20275 0.86275 0.86143 0.79124 1.92943 1.55122 1.74309 1.96389 1.93009 1.91529 1.95731 1.37517 1.19120 1.00563 0.91415 0.93843 1.84792 1.19905 1.94047 1.29803 0.89249 0.81626 0.81868 0.75767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.24 11.04 21.85 0.24 -41.00 14 2 C 0.03 1.58 4.60 85.29 0.39 1.98 14 3 Si 0.99 36.45 29.60 68.60 2.03 38.48 14 4 H -0.26 -9.12 7.11 99.48 0.71 -8.41 14 5 H -0.27 -9.53 7.11 99.48 0.71 -8.83 14 6 H -0.25 -8.82 7.11 99.48 0.71 -8.11 14 7 C -0.46 -23.28 8.61 23.42 0.20 -23.08 14 8 H 0.10 4.67 7.91 -2.91 -0.02 4.65 14 9 C 0.05 2.33 5.44 -20.97 -0.11 2.22 14 10 C -0.02 -1.09 6.74 22.95 0.15 -0.94 14 11 F -0.14 -7.25 14.33 44.97 0.64 -6.60 14 12 C 0.07 3.06 11.14 84.57 0.94 4.01 14 13 N -0.52 -23.38 9.92 -183.82 -1.82 -25.20 14 14 C 0.01 0.43 6.59 42.61 0.28 0.71 14 15 C 0.34 11.60 5.64 71.24 0.40 12.00 14 16 F -0.21 -7.70 17.05 44.97 0.77 -6.93 14 17 F -0.20 -7.22 15.29 44.97 0.69 -6.54 14 18 C 0.00 0.04 6.65 23.16 0.15 0.20 14 19 O -0.48 -19.39 10.95 -89.87 -0.98 -20.37 14 20 H 0.30 13.87 8.30 -92.71 -0.77 13.10 14 21 H 0.17 6.46 8.06 -2.91 -0.02 6.44 14 22 H 0.16 3.96 8.14 -2.39 -0.02 3.94 14 23 H 0.39 11.38 9.06 -74.06 -0.67 10.71 14 Total: -1.00 -62.17 226.39 4.59 -57.58 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.61 Total: 13.50 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 2.41 Total: -2.91 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -1.58 Total: -66.21 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.98 Total: -20.37 kcal Atomic # 9 Polarization: -22.17 SS G_CDS: 2.10 Total: -20.07 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -62.17 4.59 -57.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717150.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.224 kcal (2) G-P(sol) polarization free energy of solvation -62.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds