Wall clock time and date at job start Mon Mar 30 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30768 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48492 * 109.47044 * 85.18702 * 3 2 1 5 5 H 1.48504 * 109.46888 * 205.18598 * 3 2 1 6 6 H 1.48495 * 109.47153 * 325.18431 * 3 2 1 7 7 C 1.40047 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00417 * 196.97044 * 7 2 1 9 9 C 1.41217 * 119.99713 * 16.97086 * 7 2 1 10 10 C 1.41030 * 121.05544 * 23.86538 * 9 7 2 11 11 C 1.37830 * 118.92013 * 179.77836 * 10 9 7 12 12 F 1.35096 * 119.42677 * 180.25034 * 11 10 9 13 13 N 1.32276 * 121.13561 * 0.50885 * 11 10 9 14 14 C 1.31887 * 122.38425 * 359.74458 * 13 11 10 15 15 C 1.50704 * 119.54279 * 180.02562 * 14 13 11 16 16 F 1.39902 * 109.46978 * 119.97378 * 15 14 13 17 17 F 1.39894 * 109.46999 * 239.97434 * 15 14 13 18 18 C 1.38502 * 120.91672 * 359.97438 * 14 13 11 19 19 O 1.35680 * 120.62174 * 179.97438 * 18 14 13 20 20 H 0.97000 * 120.00022 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.54138 * 359.97438 * 10 9 7 22 22 H 1.08998 * 109.46760 * 359.97438 * 15 14 13 23 23 H 0.96704 * 114.00067 * 270.02403 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.3874 2.1052 1.3951 5 1 3.5864 1.4130 -0.5958 6 1 1.4937 2.6211 -0.7993 7 6 2.0080 -1.2128 -0.0005 8 1 3.0527 -1.2333 0.2724 9 6 1.3480 -2.4090 -0.3581 10 6 0.1956 -2.3892 -1.1707 11 6 -0.4109 -3.5832 -1.4965 12 9 -1.5125 -3.5765 -2.2785 13 7 0.0641 -4.7351 -1.0525 14 6 1.1348 -4.8093 -0.2860 15 6 1.6209 -6.1564 0.1833 16 9 2.9251 -6.3678 -0.2769 17 9 1.6076 -6.1957 1.5816 18 6 1.8194 -3.6664 0.0928 19 8 2.9199 -3.7496 0.8820 20 1 -0.4850 0.8400 0.0004 21 1 -0.2034 -1.4538 -1.5345 22 1 0.9667 -6.9353 -0.2084 23 1 2.7290 -3.7067 1.8290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238717231.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:31 Heat of formation + Delta-G solvation = -187.144485 kcal Electronic energy + Delta-G solvation = -16225.438552 eV Core-core repulsion = 12815.939518 eV Total energy + Delta-G solvation = -3409.499035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.93534 -49.77814 -47.93575 -40.72348 -37.66442 -36.37331 -32.95824 -31.24118 -28.36896 -27.09315 -23.56660 -23.28185 -19.94967 -19.23413 -18.80829 -18.24515 -18.21186 -17.34426 -17.07485 -16.78713 -16.42372 -15.97379 -14.90459 -14.83485 -14.49038 -14.32822 -14.21034 -13.81161 -13.49848 -13.30145 -13.06742 -12.60022 -12.45600 -12.06488 -11.93947 -11.37905 -10.39475 -10.22048 -9.58444 -8.93862 -6.82091 0.17801 0.51246 1.37269 1.45009 1.54992 2.10527 2.34484 2.39191 3.09958 3.14917 3.36760 3.55775 3.86914 4.12759 4.41207 4.59960 4.92254 4.94919 5.00428 5.47828 5.78348 6.14002 6.35770 6.48711 6.86963 7.06264 7.99137 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.009915 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.193371 B = 2823.304940 C = 3590.253584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.037 3.963 3 Si 0.996 3.004 4 H -0.256 1.256 5 H -0.256 1.256 6 H -0.261 1.261 7 C -0.438 4.438 8 H 0.099 0.901 9 C 0.089 3.911 10 C -0.236 4.236 11 C 0.281 3.719 12 F -0.133 7.133 13 N -0.584 5.584 14 C 0.055 3.945 15 C 0.340 3.660 16 F -0.200 7.200 17 F -0.199 7.199 18 C -0.036 4.036 19 O -0.482 6.482 20 H 0.303 0.697 21 H 0.136 0.864 22 H 0.152 0.848 23 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -1.224 1.708 2.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.183 4.183 3 Si 0.814 3.186 4 H -0.180 1.180 5 H -0.180 1.180 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.117 0.883 9 C 0.081 3.919 10 C -0.260 4.260 11 C 0.133 3.867 12 F -0.112 7.112 13 N -0.307 5.307 14 C -0.080 4.080 15 C 0.286 3.714 16 F -0.181 7.181 17 F -0.181 7.181 18 C -0.087 4.087 19 O -0.290 6.290 20 H 0.115 0.885 21 H 0.153 0.847 22 H 0.169 0.831 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.570 -1.904 0.943 2.642 hybrid contribution 0.005 1.419 0.542 1.519 sum 1.574 -0.485 1.485 2.218 Atomic orbital electron populations 1.69762 1.09430 1.32450 1.29793 1.27062 0.95570 1.05277 0.90440 0.84961 0.79094 0.74502 0.79994 1.17980 1.17980 1.18537 1.19943 0.98701 0.90796 1.37214 0.88341 1.18260 0.90629 0.93277 0.89701 1.21814 1.02267 0.96673 1.05281 1.17796 0.85342 0.90380 0.93186 1.91465 1.50691 1.97110 1.71965 1.66098 1.16287 1.28544 1.19777 1.21324 0.92730 0.95063 0.98873 1.20053 0.80959 0.95262 0.75113 1.92977 1.40983 1.95593 1.88541 1.92946 1.96660 1.97397 1.31072 1.19236 0.93981 0.92320 1.03128 1.84696 1.28351 1.95400 1.20569 0.88514 0.84670 0.83057 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.43 10.93 21.84 0.24 -36.19 14 2 C 0.04 1.65 5.20 85.29 0.44 2.10 14 3 Si 1.00 33.10 29.59 68.60 2.03 35.13 14 4 H -0.26 -8.10 7.11 99.48 0.71 -7.39 14 5 H -0.26 -8.54 7.11 99.48 0.71 -7.83 14 6 H -0.26 -8.25 7.11 99.48 0.71 -7.54 14 7 C -0.44 -21.17 8.80 23.44 0.21 -20.96 14 8 H 0.10 4.62 7.71 -2.91 -0.02 4.60 14 9 C 0.09 4.55 5.61 -21.02 -0.12 4.43 14 10 C -0.24 -12.02 8.75 22.86 0.20 -11.82 14 11 C 0.28 13.82 8.38 84.53 0.71 14.53 14 12 F -0.13 -6.15 17.28 44.97 0.78 -5.37 14 13 N -0.58 -27.70 10.22 -185.09 -1.89 -29.59 14 14 C 0.06 2.49 6.29 42.61 0.27 2.76 14 15 C 0.34 12.34 5.22 71.24 0.37 12.71 14 16 F -0.20 -7.55 16.95 44.97 0.76 -6.79 14 17 F -0.20 -7.03 16.95 44.97 0.76 -6.26 14 18 C -0.04 -1.69 6.63 23.18 0.15 -1.54 14 19 O -0.48 -20.57 11.81 -89.97 -1.06 -21.64 14 20 H 0.30 12.32 8.29 -92.71 -0.77 11.56 14 21 H 0.14 6.96 6.20 -2.91 -0.02 6.94 14 22 H 0.15 4.49 8.10 -2.39 -0.02 4.47 14 23 H 0.38 13.43 9.06 -74.05 -0.67 12.76 14 Total: -1.00 -55.41 229.33 4.47 -50.94 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.62 Total: 17.56 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 2.23 Total: 2.21 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -1.65 Total: -65.78 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.06 Total: -21.64 kcal Atomic # 9 Polarization: -20.72 SS G_CDS: 2.30 Total: -18.42 kcal Atomic # 14 Polarization: 33.10 SS G_CDS: 2.03 Total: 35.13 kcal Total: -55.41 4.47 -50.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717231.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.206 kcal (2) G-P(sol) polarization free energy of solvation -55.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds