Wall clock time and date at job start Mon Mar 30 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47476 * 270.00084 * 3 2 1 5 5 H 1.48502 * 109.47318 * 30.00147 * 3 2 1 6 6 H 1.48506 * 109.47413 * 150.00107 * 3 2 1 7 7 C 1.39910 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 197.60601 * 7 2 1 9 9 C 1.41169 * 119.99699 * 17.60087 * 7 2 1 10 10 C 1.40636 * 120.68638 * 24.22607 * 9 7 2 11 11 N 1.31481 * 120.48013 * 180.02562 * 10 9 7 12 12 C 1.32439 * 122.11255 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.33041 * 179.71806 * 12 11 10 14 14 C 1.38544 * 121.34718 * 359.97438 * 12 11 10 15 15 C 1.50706 * 120.32934 * 180.02562 * 14 12 11 16 16 F 1.39897 * 109.47159 * 119.99853 * 15 14 12 17 17 F 1.39898 * 109.46866 * 239.99773 * 15 14 12 18 18 C 1.38682 * 119.33613 * 0.02562 * 14 12 11 19 19 O 1.35540 * 120.95596 * 179.97438 * 18 14 12 20 20 H 0.97001 * 120.00474 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.76201 * 0.02562 * 10 9 7 22 22 H 1.09003 * 109.47272 * 0.02562 * 15 14 12 23 23 H 0.96702 * 113.99720 * 269.98279 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4404 2.6527 0.7001 6 1 3.5405 1.4402 0.7000 7 6 2.0084 -1.2116 0.0005 8 1 3.0505 -1.2334 0.2835 9 6 1.3521 -2.4057 -0.3686 10 6 0.2156 -2.3737 -1.1964 11 7 -0.3928 -3.4883 -1.5373 12 6 0.0281 -4.6745 -1.1253 13 9 -0.6434 -5.7835 -1.5052 14 6 1.1398 -4.8010 -0.3083 15 6 1.5990 -6.1624 0.1465 16 9 2.9052 -6.3877 -0.3012 17 9 1.5682 -6.2221 1.5439 18 6 1.8258 -3.6623 0.0867 19 8 2.9172 -3.7479 0.8859 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1601 -1.4266 -1.5546 22 1 0.9378 -6.9251 -0.2648 23 1 2.7166 -3.7083 1.8310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238717360.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:34 Heat of formation + Delta-G solvation = -168.890789 kcal Electronic energy + Delta-G solvation = -16315.190611 eV Core-core repulsion = 12906.483116 eV Total energy + Delta-G solvation = -3408.707495 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.46064 -47.87073 -46.40475 -38.91672 -36.11060 -34.34309 -31.22110 -30.20514 -25.72671 -25.44790 -21.88660 -21.48222 -17.99488 -17.80218 -17.45633 -16.70547 -16.13811 -15.79658 -15.34983 -15.16768 -14.82427 -13.75197 -13.40779 -13.23412 -12.98574 -12.80369 -12.39524 -12.32482 -11.92499 -11.60243 -11.50655 -11.11055 -10.86725 -10.63781 -9.77049 -9.54771 -8.61135 -8.55050 -7.94304 -7.26139 -4.78461 1.95373 2.23407 2.87174 2.92518 2.92626 3.63336 4.13871 4.30967 4.71097 4.75667 4.98054 5.18253 5.33569 5.63402 6.03698 6.44537 6.63633 6.71295 6.81991 7.24705 7.56951 7.95182 8.07288 8.29869 8.58542 9.04705 9.69389 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.035029 B = 0.009166 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.134694 B = 3053.988206 C = 3611.538222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.070 3.930 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.419 4.419 8 H 0.096 0.904 9 C 0.032 3.968 10 C 0.095 3.905 11 N -0.496 5.496 12 C 0.182 3.818 13 F -0.142 7.142 14 C -0.227 4.227 15 C 0.326 3.674 16 F -0.199 7.199 17 F -0.206 7.206 18 C 0.068 3.932 19 O -0.478 6.478 20 H 0.293 0.707 21 H 0.169 0.831 22 H 0.111 0.889 23 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -2.001 1.462 2.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.152 4.152 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.114 0.886 9 C 0.026 3.974 10 C -0.070 4.070 11 N -0.208 5.208 12 C 0.032 3.968 13 F -0.122 7.122 14 C -0.232 4.232 15 C 0.272 3.728 16 F -0.181 7.181 17 F -0.188 7.188 18 C 0.016 3.984 19 O -0.287 6.287 20 H 0.104 0.896 21 H 0.186 0.814 22 H 0.129 0.871 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.064 -1.967 0.441 2.280 hybrid contribution 0.665 0.503 1.058 1.347 sum 1.729 -1.464 1.500 2.717 Atomic orbital electron populations 1.69741 1.07846 1.30887 1.31554 1.26156 0.94955 1.02328 0.91728 0.86017 0.80394 0.78970 0.79891 1.18688 1.19853 1.18115 1.19606 0.98654 0.90017 1.36440 0.88609 1.18899 0.93393 0.92415 0.92690 1.22874 0.94915 0.93698 0.95481 1.66643 1.32501 0.97676 1.24002 1.16915 0.93078 0.82457 1.04330 1.91406 1.80493 1.49366 1.90954 1.20859 0.99805 0.95056 1.07468 1.20026 0.80993 0.96394 0.75419 1.92977 1.40560 1.95696 1.88834 1.92937 1.96621 1.97532 1.31686 1.18114 0.91051 0.90691 0.98556 1.84687 1.28949 1.95473 1.19555 0.89581 0.81430 0.87139 0.77277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.63 10.95 55.55 0.61 -17.02 14 2 C 0.07 1.53 5.15 -17.33 -0.09 1.44 14 3 Si 0.92 16.53 29.59 -169.99 -5.03 11.50 14 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 14 7 C -0.42 -9.95 8.78 -37.84 -0.33 -10.28 14 8 H 0.10 2.23 7.71 -52.49 -0.40 1.83 14 9 C 0.03 0.78 5.60 -106.52 -0.60 0.19 14 10 C 0.10 2.37 9.89 -16.80 -0.17 2.20 14 11 N -0.50 -12.40 10.34 -12.96 -0.13 -12.53 14 12 C 0.18 4.32 8.36 -17.18 -0.14 4.17 14 13 F -0.14 -3.09 16.19 2.25 0.04 -3.06 14 14 C -0.23 -5.14 5.39 -104.34 -0.56 -5.70 14 15 C 0.33 6.31 5.13 36.01 0.18 6.50 14 16 F -0.20 -4.03 17.04 2.25 0.04 -3.99 14 17 F -0.21 -3.93 17.03 2.25 0.04 -3.89 14 18 C 0.07 1.60 6.67 -38.06 -0.25 1.35 14 19 O -0.48 -10.34 12.00 -18.31 -0.22 -10.56 14 20 H 0.29 5.96 8.30 -40.82 -0.34 5.62 14 21 H 0.17 4.12 6.14 -52.48 -0.32 3.80 14 22 H 0.11 1.84 7.12 -51.93 -0.37 1.47 14 23 H 0.37 6.64 9.06 45.56 0.41 7.05 14 LS Contribution 227.77 15.07 3.43 3.43 Total: -1.00 -26.33 227.77 -3.01 -29.34 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.18 Total: 6.91 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.96 Total: -0.13 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.47 Total: -29.55 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.22 Total: -10.56 kcal Atomic # 9 Polarization: -11.05 SS G_CDS: 0.11 Total: -10.94 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.33 -3.01 -29.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717360.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.553 kcal (2) G-P(sol) polarization free energy of solvation -26.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds