Wall clock time and date at job start Mon Mar 30 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30762 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48508 * 109.47024 * 274.98554 * 3 2 1 5 5 H 1.48506 * 109.47056 * 34.97711 * 3 2 1 6 6 H 1.48496 * 109.47413 * 154.97992 * 3 2 1 7 7 C 1.40048 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 186.24382 * 7 2 1 9 9 C 1.40989 * 119.99609 * 5.96643 * 7 2 1 10 10 N 1.33762 * 119.87929 * 353.91281 * 9 7 2 11 11 C 1.31497 * 121.54060 * 179.97438 * 10 9 7 12 12 F 1.35097 * 119.44291 * 180.02562 * 11 10 9 13 13 C 1.39319 * 121.12075 * 359.97438 * 11 10 9 14 14 C 1.38499 * 119.63612 * 0.02562 * 13 11 10 15 15 C 1.50701 * 120.71795 * 179.97438 * 14 13 11 16 16 F 1.39899 * 109.47153 * 119.99695 * 15 14 13 17 17 F 1.39897 * 109.47179 * 239.99525 * 15 14 13 18 18 C 1.39045 * 118.56451 * 359.74041 * 14 13 11 19 19 O 1.35610 * 120.55475 * 180.24404 * 18 14 13 20 20 H 0.97002 * 120.00369 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.18273 * 180.02562 * 13 11 10 22 22 H 1.09001 * 109.47065 * 0.02562 * 15 14 13 23 23 H 0.96693 * 114.00115 * 270.24337 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3838 2.1073 -1.3949 5 1 1.4956 2.6200 0.8026 6 1 3.5878 1.4121 0.5921 7 6 2.0079 -1.2128 0.0005 8 1 3.0831 -1.2155 0.1023 9 6 1.3087 -2.4306 -0.1258 10 7 -0.0289 -2.4342 -0.1234 11 6 -0.7139 -3.5507 -0.2397 12 9 -2.0641 -3.5052 -0.2326 13 6 -0.0709 -4.7796 -0.3712 14 6 1.3131 -4.8310 -0.3795 15 6 2.0337 -6.1471 -0.5197 16 9 2.8335 -6.1209 -1.6673 17 9 2.8383 -6.3603 0.6046 18 6 2.0233 -3.6415 -0.2606 19 8 3.3793 -3.6445 -0.2689 20 1 -0.4851 0.8400 -0.0004 21 1 -0.6485 -5.6872 -0.4661 22 1 1.3049 -6.9533 -0.6036 23 1 3.7778 -3.7400 0.6069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238717452.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:34 Heat of formation + Delta-G solvation = -159.194295 kcal Electronic energy + Delta-G solvation = -16222.539961 eV Core-core repulsion = 12814.252937 eV Total energy + Delta-G solvation = -3408.287024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.44133 -47.82513 -46.44173 -38.77216 -35.80563 -34.06038 -31.69509 -29.19232 -26.19241 -25.52504 -21.80631 -21.27724 -18.09506 -17.46468 -17.23673 -16.68148 -16.50571 -15.41403 -15.15640 -14.84378 -14.69462 -14.22205 -13.34065 -13.26098 -12.84297 -12.77110 -12.20339 -12.01042 -11.73817 -11.65073 -11.17208 -10.91311 -10.75974 -10.58220 -9.91947 -9.65261 -8.67088 -8.05511 -7.67940 -6.76236 -4.87363 2.19074 2.28371 2.94855 2.98570 3.00100 3.73529 4.24911 4.31730 4.63276 5.02762 5.15776 5.24481 5.39669 5.63963 6.08804 6.26385 6.74163 6.79793 6.82437 7.08815 7.56957 7.88745 8.08969 8.41347 8.74533 9.48531 9.94309 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.010034 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.882167 B = 2789.913280 C = 3619.324777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.059 3.941 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.390 4.390 8 H 0.101 0.899 9 C 0.252 3.748 10 N -0.498 5.498 11 C 0.328 3.672 12 F -0.137 7.137 13 C -0.316 4.316 14 C -0.109 4.109 15 C 0.324 3.676 16 F -0.199 7.199 17 F -0.207 7.207 18 C -0.026 4.026 19 O -0.480 6.480 20 H 0.281 0.719 21 H 0.116 0.884 22 H 0.109 0.891 23 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -4.413 0.935 4.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.169 4.169 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.419 4.419 8 H 0.119 0.881 9 C 0.128 3.872 10 N -0.218 5.218 11 C 0.165 3.835 12 F -0.116 7.116 13 C -0.340 4.340 14 C -0.116 4.116 15 C 0.271 3.729 16 F -0.180 7.180 17 F -0.188 7.188 18 C -0.076 4.076 19 O -0.286 6.286 20 H 0.093 0.907 21 H 0.134 0.866 22 H 0.126 0.874 23 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.455 -3.418 0.409 3.737 hybrid contribution 0.528 -0.192 0.397 0.688 sum 1.983 -3.610 0.807 4.197 Atomic orbital electron populations 1.70126 1.07522 1.28987 1.24881 1.26265 0.95073 1.01891 0.93679 0.86096 0.80468 0.79677 0.79503 1.19042 1.19777 1.18047 1.19765 0.95566 0.88901 1.37717 0.88129 1.18484 0.86100 0.91989 0.90601 1.68173 1.07940 1.25081 1.20632 1.18370 0.77871 0.90653 0.96577 1.91472 1.29210 1.97227 1.93737 1.20458 0.92772 0.97128 1.23691 1.20316 0.93978 0.93094 1.04201 1.20201 0.84395 0.96933 0.71407 1.92986 1.76625 1.97698 1.50738 1.92941 1.76685 1.95953 1.53247 1.19165 0.83064 0.91965 1.13371 1.84778 1.15940 1.95516 1.32323 0.90734 0.86634 0.87394 0.78438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.75 11.48 55.55 0.64 -17.11 14 2 C 0.06 1.42 5.49 -17.33 -0.10 1.33 14 3 Si 0.92 17.55 29.56 -169.99 -5.03 12.52 14 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 7 C -0.39 -9.88 8.93 -37.86 -0.34 -10.22 14 8 H 0.10 2.38 7.34 -52.49 -0.39 1.99 14 9 C 0.25 6.66 6.56 -84.84 -0.56 6.10 14 10 N -0.50 -13.54 7.89 -11.34 -0.09 -13.63 14 11 C 0.33 8.08 8.41 -17.29 -0.15 7.94 14 12 F -0.14 -3.20 17.29 2.25 0.04 -3.17 14 13 C -0.32 -6.84 9.74 -39.08 -0.38 -7.22 14 14 C -0.11 -2.37 5.40 -104.23 -0.56 -2.94 14 15 C 0.32 5.82 5.17 36.01 0.19 6.01 14 16 F -0.20 -3.88 17.04 2.25 0.04 -3.84 14 17 F -0.21 -3.72 17.07 2.25 0.04 -3.68 14 18 C -0.03 -0.62 6.66 -38.14 -0.25 -0.87 14 19 O -0.48 -10.48 11.75 -18.53 -0.22 -10.70 14 20 H 0.28 6.43 8.29 -40.82 -0.34 6.09 14 21 H 0.12 2.10 7.99 -52.49 -0.42 1.68 14 22 H 0.11 1.51 7.93 -51.93 -0.41 1.10 14 23 H 0.36 6.45 9.06 45.56 0.41 6.86 14 LS Contribution 230.38 15.07 3.47 3.47 Total: -1.00 -28.78 230.38 -3.19 -31.97 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.06 Total: 4.02 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.15 Total: 0.13 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.55 Total: -30.74 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.22 Total: -10.70 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 0.12 Total: -10.69 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.78 -3.19 -31.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717452.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.221 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds