Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48503 * 109.47308 * 95.00636 * 3 2 1 5 5 H 1.48497 * 109.47237 * 215.01253 * 3 2 1 6 6 H 1.48499 * 109.46815 * 335.01053 * 3 2 1 7 7 C 1.40027 * 120.00173 * 180.27393 * 2 1 3 8 8 H 1.07999 * 120.00384 * 173.72574 * 7 2 1 9 9 C 1.40977 * 119.99925 * 353.72297 * 7 2 1 10 10 N 1.33703 * 119.85556 * 6.39890 * 9 7 2 11 11 C 1.31308 * 121.58830 * 179.97438 * 10 9 7 12 12 C 1.39285 * 121.13091 * 0.02562 * 11 10 9 13 13 F 1.35101 * 120.20430 * 180.02562 * 12 11 10 14 14 C 1.38873 * 119.59755 * 359.97438 * 12 11 10 15 15 C 1.50699 * 120.73916 * 180.02562 * 14 12 11 16 16 F 1.39897 * 109.46808 * 30.00457 * 15 14 12 17 17 F 1.39903 * 109.46845 * 150.00345 * 15 14 12 18 18 C 1.38836 * 118.52109 * 359.72720 * 14 12 11 19 19 O 1.35587 * 120.56308 * 180.28539 * 18 14 12 20 20 H 0.97003 * 119.99787 * 359.72155 * 1 2 3 21 21 H 1.07996 * 119.43270 * 180.02562 * 11 10 9 22 22 H 1.09001 * 109.47230 * 269.99859 * 15 14 12 23 23 H 0.96702 * 114.00221 * 270.24797 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.5952 1.9854 1.3947 5 1 3.4824 1.4731 -0.8033 6 1 1.3903 2.6809 -0.5915 7 6 2.0080 -1.2126 -0.0058 8 1 3.0832 -1.2150 -0.1080 9 6 1.3095 -2.4305 0.1219 10 7 -0.0275 -2.4344 0.1194 11 6 -0.7123 -3.5487 0.2356 12 6 -0.0706 -4.7779 0.3673 13 9 -0.7937 -5.9130 0.4851 14 6 1.3172 -4.8297 0.3758 15 6 2.0380 -6.1456 0.5163 16 9 1.2593 -7.1656 -0.0409 17 9 3.2656 -6.0784 -0.1513 18 6 2.0257 -3.6428 0.2456 19 8 3.3815 -3.6460 0.2427 20 1 -0.4850 0.8401 0.0041 21 1 -1.7916 -3.5115 0.2290 22 1 2.2096 -6.3550 1.5722 23 1 3.7769 -3.5557 1.1206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238717528.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = -179.669618 kcal Electronic energy + Delta-G solvation = -16339.964040 eV Core-core repulsion = 12930.789140 eV Total energy + Delta-G solvation = -3409.174900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.01159 -49.31445 -47.90436 -40.55910 -37.63335 -35.71132 -33.12758 -31.27957 -27.70167 -27.11570 -23.60686 -23.07229 -19.74231 -19.33059 -18.74102 -18.42644 -17.71930 -17.32172 -16.81086 -16.74247 -16.18308 -15.44801 -15.19890 -14.77657 -14.57015 -14.24234 -14.14726 -13.68070 -13.40647 -13.26739 -12.83296 -12.67671 -12.22535 -12.09608 -11.51791 -11.24862 -10.32342 -9.83813 -9.55782 -8.52143 -6.63655 0.39673 0.47776 1.42346 1.50021 1.56814 2.18091 2.57182 2.81495 3.16186 3.38988 3.52463 3.60257 3.91057 3.98828 4.11929 4.63766 4.87575 5.02571 5.08193 5.25562 5.80890 6.10617 6.35093 6.64624 7.09929 7.78791 8.24680 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.008968 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.881448 B = 3121.614215 C = 3790.333453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.020 3.980 3 Si 0.995 3.005 4 H -0.257 1.257 5 H -0.256 1.256 6 H -0.268 1.268 7 C -0.421 4.421 8 H 0.104 0.896 9 C 0.190 3.810 10 N -0.478 5.478 11 C 0.102 3.898 12 C -0.093 4.093 13 F -0.151 7.151 14 C -0.166 4.166 15 C 0.323 3.677 16 F -0.208 7.208 17 F -0.197 7.197 18 C -0.009 4.009 19 O -0.479 6.479 20 H 0.288 0.712 21 H 0.157 0.843 22 H 0.157 0.843 23 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -2.349 3.717 5.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.204 4.204 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.179 1.179 6 H -0.192 1.192 7 C -0.450 4.450 8 H 0.122 0.878 9 C 0.066 3.934 10 N -0.192 5.192 11 C -0.066 4.066 12 C -0.118 4.118 13 F -0.131 7.131 14 C -0.174 4.174 15 C 0.269 3.731 16 F -0.189 7.189 17 F -0.178 7.178 18 C -0.059 4.059 19 O -0.287 6.287 20 H 0.099 0.901 21 H 0.175 0.825 22 H 0.174 0.826 23 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.887 -1.538 2.981 4.426 hybrid contribution 0.357 -0.518 0.395 0.743 sum 3.245 -2.056 3.376 5.114 Atomic orbital electron populations 1.70178 1.09091 1.30345 1.26284 1.27145 0.95791 1.04955 0.92530 0.85012 0.78796 0.74813 0.79970 1.18132 1.17923 1.19194 1.20029 0.96113 0.89734 1.39160 0.87848 1.19426 0.88647 0.92945 0.92378 1.68862 1.07343 1.25598 1.17419 1.23175 1.00972 0.86755 0.95671 1.18046 0.88305 0.83504 1.21927 1.91345 1.77453 1.49125 1.95148 1.21115 0.93512 0.95885 1.06874 1.20325 0.74821 0.82224 0.95681 1.92967 1.75823 1.61745 1.88412 1.93002 1.44315 1.96551 1.83927 1.18906 0.83923 0.91018 1.12074 1.84746 1.14558 1.95303 1.34101 0.90067 0.82536 0.82596 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.58 11.49 21.84 0.25 -36.32 14 2 C 0.02 0.93 5.49 85.28 0.47 1.40 14 3 Si 0.99 34.51 29.56 68.60 2.03 36.54 14 4 H -0.26 -8.51 7.11 99.48 0.71 -7.80 14 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 14 6 H -0.27 -8.91 7.11 99.48 0.71 -8.21 14 7 C -0.42 -20.91 8.93 23.38 0.21 -20.70 14 8 H 0.10 4.82 7.34 -2.91 -0.02 4.80 14 9 C 0.19 9.83 6.56 40.30 0.26 10.10 14 10 N -0.48 -25.17 7.88 -188.48 -1.48 -26.65 14 11 C 0.10 4.78 11.17 85.02 0.95 5.73 14 12 C -0.09 -4.21 7.20 22.67 0.16 -4.05 14 13 F -0.15 -6.47 15.56 44.97 0.70 -5.77 14 14 C -0.17 -7.23 5.77 -19.57 -0.11 -7.34 14 15 C 0.32 11.54 5.56 71.24 0.40 11.94 14 16 F -0.21 -7.98 15.60 44.97 0.70 -7.27 14 17 F -0.20 -7.40 15.44 44.97 0.69 -6.70 14 18 C -0.01 -0.40 6.65 23.18 0.15 -0.25 14 19 O -0.48 -19.33 10.72 -88.96 -0.95 -20.28 14 20 H 0.29 12.75 8.30 -92.71 -0.77 11.98 14 21 H 0.16 6.49 8.06 -2.91 -0.02 6.46 14 22 H 0.16 4.14 8.14 -2.39 -0.02 4.12 14 23 H 0.38 11.61 9.06 -74.06 -0.67 10.94 14 Total: -1.00 -60.35 225.78 5.04 -55.31 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.62 Total: 14.34 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 2.49 Total: -3.18 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -1.23 Total: -62.98 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.95 Total: -20.28 kcal Atomic # 9 Polarization: -21.84 SS G_CDS: 2.10 Total: -19.74 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Total: -60.35 5.04 -55.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717528.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.361 kcal (2) G-P(sol) polarization free energy of solvation -60.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds