Wall clock time and date at job start Mon Mar 30 2020 03:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30768 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47147 * 270.00188 * 3 2 1 5 5 H 1.48498 * 109.47065 * 29.99944 * 3 2 1 6 6 H 1.48503 * 109.46817 * 149.99916 * 3 2 1 7 7 C 1.40044 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.41066 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.33744 * 119.88099 * 359.97438 * 9 7 2 11 11 C 1.31360 * 121.62257 * 180.02562 * 10 9 7 12 12 C 1.38885 * 121.21754 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.18675 * 179.70153 * 12 11 10 14 14 F 1.39900 * 109.47157 * 30.00481 * 13 12 11 15 15 F 1.39894 * 109.46760 * 150.00247 * 13 12 11 16 16 C 1.38794 * 119.62522 * 359.97438 * 12 11 10 17 17 F 1.35094 * 120.75299 * 179.97438 * 16 12 11 18 18 C 1.39286 * 118.49442 * 359.97438 * 16 12 11 19 19 O 1.35628 * 120.59693 * 180.02562 * 18 16 12 20 20 H 0.97002 * 119.99796 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.39394 * 180.02562 * 11 10 9 22 22 H 1.08999 * 109.46673 * 270.00524 * 13 12 11 23 23 H 0.96697 * 113.99867 * 269.99668 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4891 2.0464 -1.4000 5 1 1.4391 2.6526 0.7000 6 1 3.5392 1.4401 0.7001 7 6 2.0079 -1.2128 0.0005 8 1 3.0878 -1.2128 0.0001 9 6 1.3025 -2.4345 0.0005 10 7 -0.0350 -2.4316 0.0005 11 6 -0.7261 -3.5487 0.0010 12 6 -0.0947 -4.7858 0.0021 13 6 -0.9105 -6.0528 0.0095 14 9 -2.1261 -5.8286 -0.6456 15 9 -0.2053 -7.0652 -0.6499 16 6 1.2918 -4.8484 0.0022 17 9 1.9295 -6.0394 0.0037 18 6 2.0109 -3.6555 0.0005 19 8 3.3671 -3.6670 0.0000 20 1 -0.4850 0.8401 0.0004 21 1 -1.8052 -3.5044 0.0006 22 1 -1.1028 -6.3551 1.0389 23 1 3.7608 -3.6693 0.8832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238721662.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:31 Heat of formation + Delta-G solvation = -184.521627 kcal Electronic energy + Delta-G solvation = -16201.142667 eV Core-core repulsion = 12791.757367 eV Total energy + Delta-G solvation = -3409.385299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.07493 -49.59687 -47.82688 -40.43626 -37.74237 -35.83643 -32.87475 -31.10574 -28.95590 -25.88964 -23.93936 -22.95699 -19.92585 -19.25715 -18.75975 -18.29921 -17.60557 -17.41169 -17.23398 -16.66611 -16.44185 -15.32183 -15.15966 -14.84685 -14.68605 -14.25981 -13.97911 -13.78315 -13.46843 -13.29085 -12.89069 -12.75853 -12.25391 -12.05077 -11.47833 -11.32811 -10.05557 -9.85968 -9.69681 -8.56511 -6.80768 0.42483 0.54683 1.40668 1.49111 1.56304 2.15251 2.55313 3.00956 3.25528 3.35686 3.46841 3.77280 3.95880 4.07307 4.19319 4.48844 4.95996 5.04364 5.10692 5.23565 5.75092 6.02856 6.27405 6.57301 7.05484 7.81758 8.17312 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039958 B = 0.008512 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.574849 B = 3288.658631 C = 3945.696648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.019 3.981 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.251 1.251 7 C -0.406 4.406 8 H 0.103 0.897 9 C 0.218 3.782 10 N -0.506 5.506 11 C 0.179 3.821 12 C -0.408 4.408 13 C 0.341 3.659 14 F -0.210 7.210 15 F -0.219 7.219 16 C 0.154 3.846 17 F -0.139 7.139 18 C -0.117 4.117 19 O -0.485 6.485 20 H 0.292 0.708 21 H 0.161 0.839 22 H 0.147 0.853 23 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -1.820 3.265 3.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.207 4.207 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.175 1.175 7 C -0.434 4.434 8 H 0.121 0.879 9 C 0.096 3.904 10 N -0.220 5.220 11 C 0.008 3.992 12 C -0.416 4.416 13 C 0.287 3.713 14 F -0.191 7.191 15 F -0.200 7.200 16 C 0.129 3.871 17 F -0.117 7.117 18 C -0.167 4.167 19 O -0.293 6.293 20 H 0.103 0.897 21 H 0.178 0.822 22 H 0.164 0.836 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.802 -0.914 2.620 2.889 hybrid contribution 0.845 -0.685 0.267 1.120 sum 0.043 -1.599 2.888 3.301 Atomic orbital electron populations 1.70164 1.09066 1.30689 1.24369 1.27204 0.95912 1.04996 0.92608 0.84964 0.79090 0.74635 0.79733 1.18767 1.18508 1.17461 1.20188 0.95844 0.89751 1.37646 0.87906 1.19234 0.88814 0.92148 0.90200 1.68874 1.06549 1.27066 1.19496 1.22713 1.00458 0.86237 0.89745 1.20897 0.91988 0.97584 1.31101 1.20172 0.75422 0.82599 0.93071 1.92923 1.46419 1.95149 1.84617 1.92937 1.79787 1.62791 1.84531 1.17999 0.90210 0.79817 0.99084 1.91402 1.82413 1.44300 1.93614 1.19423 0.84010 0.91337 1.21890 1.84735 1.15190 1.96074 1.33263 0.89685 0.82173 0.83618 0.76738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.07 11.46 21.84 0.25 -34.82 14 2 C 0.02 0.85 5.50 85.29 0.47 1.32 14 3 Si 1.00 33.95 29.56 68.60 2.03 35.98 14 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 14 5 H -0.26 -8.34 7.11 99.48 0.71 -7.63 14 6 H -0.25 -8.22 7.11 99.48 0.71 -7.52 14 7 C -0.41 -20.30 8.95 23.40 0.21 -20.09 14 8 H 0.10 4.84 7.32 -2.91 -0.02 4.82 14 9 C 0.22 11.45 6.56 40.26 0.26 11.71 14 10 N -0.51 -26.31 7.86 -188.81 -1.48 -27.79 14 11 C 0.18 8.09 10.56 84.92 0.90 8.99 14 12 C -0.41 -17.58 5.77 -19.58 -0.11 -17.70 14 13 C 0.34 11.98 5.61 71.24 0.40 12.38 14 14 F -0.21 -7.36 16.49 44.97 0.74 -6.62 14 15 F -0.22 -8.42 15.57 44.97 0.70 -7.72 14 16 C 0.15 7.17 7.21 22.66 0.16 7.33 14 17 F -0.14 -6.16 15.45 44.97 0.69 -5.46 14 18 C -0.12 -5.74 6.77 23.24 0.16 -5.58 14 19 O -0.49 -21.56 12.55 -89.41 -1.12 -22.69 14 20 H 0.29 12.50 8.29 -92.71 -0.77 11.73 14 21 H 0.16 6.32 7.59 -2.91 -0.02 6.29 14 22 H 0.15 3.90 8.14 -2.39 -0.02 3.88 14 23 H 0.38 13.06 9.06 -74.06 -0.67 12.39 14 Total: -1.00 -59.80 227.59 4.87 -54.93 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.62 Total: 15.83 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 2.45 Total: -1.63 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -1.23 Total: -62.61 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -1.12 Total: -22.69 kcal Atomic # 9 Polarization: -21.94 SS G_CDS: 2.14 Total: -19.80 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -59.80 4.87 -54.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238721662.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.594 kcal (2) G-P(sol) polarization free energy of solvation -59.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds