Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 120.00180 * 2 1 4 4 H 1.48497 * 109.46796 * 274.67159 * 3 2 1 5 5 H 1.48500 * 109.46826 * 34.66966 * 3 2 1 6 6 H 1.48491 * 109.47305 * 154.66939 * 3 2 1 7 7 C 1.39927 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00349 * 162.50140 * 7 2 1 9 9 C 1.41223 * 119.99810 * 342.49699 * 7 2 1 10 10 C 1.40693 * 120.70637 * 335.49652 * 9 7 2 11 11 N 1.31445 * 120.49540 * 179.97438 * 10 9 7 12 12 C 1.32252 * 122.17217 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.30962 * 179.97438 * 12 11 10 14 14 F 1.39912 * 109.46863 * 29.99718 * 13 12 11 15 15 F 1.39895 * 109.47377 * 149.99558 * 13 12 11 16 16 C 1.38324 * 121.38301 * 359.70789 * 12 11 10 17 17 F 1.35101 * 120.33909 * 180.29686 * 16 12 11 18 18 C 1.39076 * 119.31019 * 0.58804 * 16 12 11 19 19 O 1.35585 * 120.97550 * 179.70319 * 18 16 12 20 20 H 0.97005 * 119.99474 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.75674 * 359.97438 * 10 9 7 22 22 H 1.08997 * 109.47591 * 270.00285 * 13 12 11 23 23 H 0.96695 * 114.00579 * 269.72170 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3915 2.1034 -1.3954 5 1 1.4931 2.6221 0.7964 6 1 3.5861 1.4137 0.5990 7 6 2.0083 -1.2118 0.0005 8 1 3.0508 -1.2337 -0.2807 9 6 1.3512 -2.4063 0.3689 10 6 0.2164 -2.3751 1.2000 11 7 -0.3923 -3.4894 1.5399 12 6 0.0238 -4.6741 1.1246 13 6 -0.7227 -5.9106 1.5544 14 9 -2.0718 -5.5961 1.7509 15 9 -0.6121 -6.8907 0.5623 16 6 1.1268 -4.8016 0.2996 17 9 1.5299 -6.0219 -0.1170 18 6 1.8198 -3.6611 -0.0917 19 8 2.9089 -3.7474 -0.8947 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1574 -1.4285 1.5615 22 1 -0.2981 -6.2863 2.4853 23 1 3.7441 -3.8395 -0.4163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238721755.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = -191.089326 kcal Electronic energy + Delta-G solvation = -16211.584629 eV Core-core repulsion = 12801.914533 eV Total energy + Delta-G solvation = -3409.670096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.10002 -49.58445 -47.85134 -40.58594 -37.97454 -36.18833 -32.49697 -31.50578 -29.02462 -26.04976 -23.99974 -23.05807 -19.85954 -19.47614 -18.79222 -18.39403 -17.61862 -17.47001 -17.38279 -16.73934 -16.54228 -15.50100 -14.98836 -14.76519 -14.60835 -14.21582 -14.19704 -13.99644 -13.66213 -13.45563 -13.13828 -12.81309 -12.37044 -12.04097 -11.40847 -11.28733 -10.41792 -10.03483 -9.71344 -9.00261 -6.72267 0.26777 0.45946 1.39740 1.47495 1.58675 2.11762 2.38658 2.82175 3.17331 3.20051 3.28979 3.55593 3.86644 4.09573 4.41376 4.47888 4.88349 4.98062 5.02614 5.38677 5.73553 6.07392 6.27944 6.44207 6.98544 7.33312 7.97247 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039450 B = 0.008529 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.595441 B = 3282.236889 C = 3890.957706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.033 3.967 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.249 1.249 7 C -0.419 4.419 8 H 0.103 0.897 9 C 0.041 3.959 10 C 0.038 3.962 11 N -0.437 5.437 12 C -0.155 4.155 13 C 0.345 3.655 14 F -0.207 7.207 15 F -0.210 7.210 16 C 0.085 3.915 17 F -0.137 7.137 18 C -0.046 4.046 19 O -0.481 6.481 20 H 0.307 0.693 21 H 0.160 0.840 22 H 0.153 0.847 23 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 -0.345 3.120 4.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.172 1.172 7 C -0.446 4.446 8 H 0.121 0.879 9 C 0.035 3.965 10 C -0.132 4.132 11 N -0.145 5.145 12 C -0.288 4.288 13 C 0.291 3.709 14 F -0.188 7.188 15 F -0.191 7.191 16 C 0.062 3.938 17 F -0.116 7.116 18 C -0.098 4.098 19 O -0.290 6.290 20 H 0.119 0.881 21 H 0.177 0.823 22 H 0.170 0.830 23 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.424 -0.304 3.138 3.977 hybrid contribution 1.118 0.167 -0.568 1.265 sum 3.542 -0.136 2.570 4.378 Atomic orbital electron populations 1.69792 1.09552 1.32899 1.28863 1.27158 0.95630 1.05517 0.90518 0.84870 0.79273 0.74091 0.79764 1.18643 1.18311 1.17219 1.20015 0.99109 0.90830 1.34605 0.87947 1.19130 0.93781 0.92916 0.90662 1.22959 0.96021 0.94826 0.99385 1.66759 1.28719 0.97607 1.21440 1.20929 1.01318 0.95018 1.11527 1.20102 0.77407 0.82722 0.90653 1.92931 1.36602 1.93685 1.95571 1.92955 1.95929 1.64018 1.66227 1.18724 0.97450 0.79830 0.97756 1.91401 1.90205 1.41251 1.88711 1.18767 0.96206 0.90818 1.03984 1.84720 1.15560 1.95239 1.33522 0.88146 0.82303 0.83038 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.74 10.97 21.83 0.24 -35.50 14 2 C 0.03 1.39 5.16 85.25 0.44 1.83 14 3 Si 1.00 31.46 29.59 68.60 2.03 33.49 14 4 H -0.26 -8.11 7.11 99.48 0.71 -7.41 14 5 H -0.26 -7.69 7.11 99.48 0.71 -6.98 14 6 H -0.25 -7.53 7.11 99.48 0.71 -6.83 14 7 C -0.42 -19.47 8.78 23.41 0.21 -19.26 14 8 H 0.10 4.45 7.71 -2.91 -0.02 4.42 14 9 C 0.04 2.07 5.59 -21.11 -0.12 1.95 14 10 C 0.04 1.90 9.89 85.35 0.84 2.74 14 11 N -0.44 -21.75 9.91 -181.86 -1.80 -23.55 14 12 C -0.16 -7.27 6.59 42.52 0.28 -6.98 14 13 C 0.35 13.45 5.66 71.24 0.40 13.85 14 14 F -0.21 -8.52 17.05 44.97 0.77 -7.75 14 15 F -0.21 -8.42 15.42 44.97 0.69 -7.73 14 16 C 0.08 4.02 7.16 22.49 0.16 4.18 14 17 F -0.14 -6.11 15.26 44.97 0.69 -5.42 14 18 C -0.05 -2.22 6.81 23.31 0.16 -2.06 14 19 O -0.48 -20.72 12.83 -88.93 -1.14 -21.86 14 20 H 0.31 12.19 8.30 -92.70 -0.77 11.43 14 21 H 0.16 7.96 6.17 -2.91 -0.02 7.94 14 22 H 0.15 4.54 8.14 -2.39 -0.02 4.52 14 23 H 0.38 12.37 9.06 -74.06 -0.67 11.70 14 Total: -1.00 -57.75 227.36 4.47 -53.28 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.62 Total: 18.79 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 2.37 Total: -3.75 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -1.56 Total: -59.05 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.14 Total: -21.86 kcal Atomic # 9 Polarization: -23.04 SS G_CDS: 2.15 Total: -20.90 kcal Atomic # 14 Polarization: 31.46 SS G_CDS: 2.03 Total: 33.49 kcal Total: -57.75 4.47 -53.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238721755.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.810 kcal (2) G-P(sol) polarization free energy of solvation -57.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds