Wall clock time and date at job start Mon Mar 30 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48503 * 109.46706 * 239.99689 * 3 2 1 5 5 H 1.48497 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46955 * 119.99974 * 3 2 1 7 7 C 1.39925 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00450 * 162.95859 * 7 2 1 9 9 C 1.41352 * 119.99919 * 342.96297 * 7 2 1 10 10 C 1.40759 * 120.65845 * 335.25360 * 9 7 2 11 11 N 1.31444 * 120.53324 * 180.02562 * 10 9 7 12 12 C 1.32148 * 122.10221 * 359.97329 * 11 10 9 13 13 C 1.50702 * 119.35166 * 179.97438 * 12 11 10 14 14 F 1.39908 * 109.47035 * 30.00701 * 13 12 11 15 15 F 1.39899 * 109.47278 * 150.00016 * 13 12 11 16 16 C 1.38820 * 121.29330 * 0.02562 * 12 11 10 17 17 O 1.35981 * 120.35824 * 180.02562 * 16 12 11 18 18 C 1.38880 * 119.29230 * 0.02562 * 16 12 11 19 19 F 1.35099 * 120.95190 * 180.02562 * 18 16 12 20 20 H 0.97001 * 120.00356 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.73386 * 0.02562 * 10 9 7 22 22 H 1.08999 * 109.47408 * 270.00340 * 13 12 11 23 23 H 0.96707 * 113.99606 * 269.99885 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0525 -1.2325 -0.2735 9 6 1.3479 -2.4089 0.3597 10 6 0.2099 -2.3804 1.1876 11 7 -0.4019 -3.4952 1.5205 12 6 0.0145 -4.6770 1.1008 13 6 -0.7337 -5.9158 1.5211 14 9 -2.0834 -5.6023 1.7144 15 9 -0.6196 -6.8904 0.5239 16 6 1.1282 -4.7999 0.2812 17 8 1.5397 -6.0256 -0.1399 18 6 1.8177 -3.6575 -0.1040 19 9 2.9055 -3.7381 -0.9012 20 1 -0.4851 0.8400 0.0004 21 1 -0.1637 -1.4350 1.5521 22 1 -0.3123 -6.2968 2.4513 23 1 2.1756 -6.4516 0.4512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238721823.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:22 Heat of formation + Delta-G solvation = -172.396721 kcal Electronic energy + Delta-G solvation = -16203.326364 eV Core-core repulsion = 12794.466841 eV Total energy + Delta-G solvation = -3408.859524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.17773 -47.57630 -46.20321 -38.84393 -36.47532 -34.34753 -31.02504 -29.42302 -27.28241 -24.30768 -22.20094 -21.20049 -18.40247 -17.22411 -17.02497 -16.78966 -16.53408 -15.81349 -15.20391 -14.72957 -14.63714 -13.86250 -13.29140 -13.16045 -12.91191 -12.55759 -12.43553 -12.05377 -11.87151 -11.65127 -11.49560 -11.16995 -10.82983 -10.62546 -9.89358 -9.70060 -8.43482 -8.24152 -7.88479 -7.29904 -4.90273 2.03062 2.31178 2.84472 2.87468 2.91279 3.59583 4.09951 4.43666 4.82415 4.85644 5.04619 5.24238 5.61829 5.75194 6.21459 6.42151 6.65155 6.67054 6.79126 7.25667 7.51211 7.88403 7.99639 8.21869 8.37278 9.20737 9.64481 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.008572 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.691490 B = 3265.629156 C = 3883.095121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.071 3.929 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.418 4.418 8 H 0.093 0.907 9 C 0.055 3.945 10 C 0.061 3.939 11 N -0.434 5.434 12 C -0.115 4.115 13 C 0.347 3.653 14 F -0.202 7.202 15 F -0.199 7.199 16 C 0.093 3.907 17 O -0.487 6.487 18 C -0.034 4.034 19 F -0.145 7.145 20 H 0.296 0.704 21 H 0.166 0.834 22 H 0.102 0.898 23 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -2.387 3.362 4.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.152 4.152 3 Si 0.749 3.251 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.111 0.889 9 C 0.049 3.951 10 C -0.107 4.107 11 N -0.144 5.144 12 C -0.248 4.248 13 C 0.292 3.708 14 F -0.183 7.183 15 F -0.181 7.181 16 C 0.045 3.955 17 O -0.294 6.294 18 C -0.059 4.059 19 F -0.124 7.124 20 H 0.107 0.893 21 H 0.183 0.817 22 H 0.120 0.880 23 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.037 -2.217 3.327 4.131 hybrid contribution 1.482 0.541 -0.530 1.664 sum 2.518 -1.676 2.797 4.120 Atomic orbital electron populations 1.69737 1.07900 1.31215 1.29876 1.26146 0.94999 1.02330 0.91699 0.86031 0.80043 0.78410 0.80615 1.18402 1.19642 1.18141 1.19675 0.98437 0.90409 1.36134 0.88879 1.18695 0.93676 0.91303 0.91426 1.22918 0.95053 0.94875 0.97841 1.66768 1.29107 0.97439 1.21044 1.20756 1.00673 0.93828 1.09590 1.19679 0.77832 0.84259 0.89015 1.92946 1.36069 1.93684 1.95609 1.92986 1.95809 1.64171 1.65100 1.18780 0.95353 0.83940 0.97386 1.84885 1.64351 1.29312 1.50837 1.18239 0.91137 0.93968 1.02579 1.91313 1.52166 1.96962 1.71928 0.89295 0.81718 0.88032 0.76955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.71 10.95 55.55 0.61 -17.11 14 2 C 0.07 1.59 5.16 -17.34 -0.09 1.50 14 3 Si 0.93 16.53 29.59 -169.99 -5.03 11.50 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 14 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 14 7 C -0.42 -10.20 8.84 -37.77 -0.33 -10.53 14 8 H 0.09 2.20 7.80 -52.49 -0.41 1.79 14 9 C 0.06 1.40 5.59 -106.62 -0.60 0.81 14 10 C 0.06 1.54 9.89 -16.77 -0.17 1.37 14 11 N -0.43 -10.67 9.92 -8.72 -0.09 -10.76 14 12 C -0.12 -2.65 6.60 -82.24 -0.54 -3.19 14 13 C 0.35 6.72 5.63 36.01 0.20 6.92 14 14 F -0.20 -4.20 17.05 2.25 0.04 -4.17 14 15 F -0.20 -3.96 15.27 2.25 0.03 -3.92 14 16 C 0.09 2.15 6.61 -39.13 -0.26 1.89 14 17 O -0.49 -9.76 11.31 -19.68 -0.22 -9.98 14 18 C -0.03 -0.83 7.39 -38.21 -0.28 -1.12 14 19 F -0.14 -3.54 16.73 2.25 0.04 -3.50 14 20 H 0.30 6.10 8.30 -40.82 -0.34 5.76 14 21 H 0.17 4.07 6.16 -52.49 -0.32 3.75 14 22 H 0.10 1.55 8.14 -51.93 -0.42 1.12 14 23 H 0.38 5.45 9.06 45.56 0.41 5.86 14 LS Contribution 227.32 15.07 3.43 3.43 Total: -1.00 -28.08 227.32 -3.14 -31.22 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.12 Total: 5.62 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.07 Total: -2.34 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: 0.52 Total: -27.86 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.22 Total: -9.98 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 0.11 Total: -11.59 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.08 -3.14 -31.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238721823.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.181 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds