Wall clock time and date at job start Mon Mar 30 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46904 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47294 * 300.00107 * 3 2 1 6 6 H 1.48496 * 109.47076 * 60.00651 * 3 2 1 7 7 C 1.40025 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99340 * 179.97438 * 7 2 1 9 9 C 1.41279 * 120.00352 * 359.97438 * 7 2 1 10 10 N 1.33755 * 119.83187 * 359.97438 * 9 7 2 11 11 C 1.31430 * 121.66641 * 180.02562 * 10 9 7 12 12 C 1.38674 * 121.15297 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.22658 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.47313 * 29.98519 * 13 12 11 15 15 F 1.39903 * 109.46831 * 149.97880 * 13 12 11 16 16 C 1.39262 * 119.54150 * 359.97438 * 12 11 10 17 17 O 1.35820 * 120.76781 * 179.97438 * 16 12 11 18 18 C 1.39181 * 118.46275 * 0.24756 * 16 12 11 19 19 F 1.35103 * 120.57870 * 179.74771 * 18 16 12 20 20 H 0.97003 * 119.99958 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.42310 * 179.97438 * 11 10 9 22 22 H 1.08997 * 109.47225 * 269.98294 * 13 12 11 23 23 H 0.96700 * 114.00259 * 89.99915 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7016 1.3464 -0.0006 5 1 1.8829 2.3965 -1.2125 6 1 1.8830 2.3964 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3013 -2.4362 -0.0005 10 7 -0.0362 -2.4323 0.0005 11 6 -0.7295 -3.5489 0.0010 12 6 -0.0996 -4.7843 0.0011 13 6 -0.9151 -6.0516 0.0023 14 9 -2.1288 -5.8259 -0.6561 15 9 -0.2075 -7.0621 -0.6578 16 6 1.2916 -4.8458 0.0000 17 8 1.9343 -6.0423 0.0005 18 6 2.0083 -3.6527 0.0042 19 9 3.3593 -3.6624 0.0085 20 1 -0.4850 0.8401 0.0004 21 1 -1.8085 -3.5035 0.0023 22 1 -1.1107 -6.3569 1.0302 23 1 2.1197 -6.3897 -0.8827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238721831.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:28 Heat of formation + Delta-G solvation = -184.780758 kcal Electronic energy + Delta-G solvation = -16201.584723 eV Core-core repulsion = 12792.188187 eV Total energy + Delta-G solvation = -3409.396536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.77001 -49.34570 -47.79592 -40.46602 -38.20610 -35.69289 -32.66316 -31.34491 -28.95254 -25.87839 -23.97906 -22.90920 -20.27531 -18.84886 -18.50062 -18.32839 -18.02941 -17.43535 -16.84885 -16.71034 -16.26265 -15.67449 -14.96087 -14.64799 -14.29584 -14.20734 -14.06307 -13.92524 -13.65713 -13.22265 -12.90422 -12.77881 -12.39184 -12.01488 -11.40353 -11.33798 -10.06951 -9.93111 -9.71599 -8.58836 -6.82957 0.40600 0.52821 1.38393 1.45665 1.55253 2.14345 2.53151 3.03624 3.13967 3.41155 3.46660 3.78009 4.00272 4.15298 4.25301 4.57253 4.88131 4.96888 5.15596 5.30732 5.61380 5.96924 6.30385 6.56256 6.75171 7.76681 8.16533 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039538 B = 0.008557 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.015863 B = 3271.334570 C = 3935.624213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.424 4.424 8 H 0.093 0.907 9 C 0.214 3.786 10 N -0.500 5.500 11 C 0.166 3.834 12 C -0.384 4.384 13 C 0.349 3.651 14 F -0.212 7.212 15 F -0.211 7.211 16 C 0.175 3.825 17 O -0.491 6.491 18 C -0.135 4.135 19 F -0.155 7.155 20 H 0.292 0.708 21 H 0.160 0.840 22 H 0.138 0.862 23 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -3.530 -0.205 3.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.203 4.203 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.453 4.453 8 H 0.111 0.889 9 C 0.091 3.909 10 N -0.213 5.213 11 C -0.003 4.003 12 C -0.391 4.391 13 C 0.295 3.705 14 F -0.193 7.193 15 F -0.193 7.193 16 C 0.123 3.877 17 O -0.304 6.304 18 C -0.159 4.159 19 F -0.134 7.134 20 H 0.104 0.896 21 H 0.178 0.822 22 H 0.155 0.845 23 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.702 -2.536 0.359 3.075 hybrid contribution 1.019 -0.458 -0.660 1.298 sum -0.683 -2.994 -0.300 3.085 Atomic orbital electron populations 1.70146 1.08918 1.30631 1.24720 1.27107 0.95945 1.04745 0.92536 0.84939 0.79150 0.74897 0.79560 1.17995 1.18251 1.18224 1.20197 0.95426 0.90310 1.39364 0.88857 1.19048 0.89279 0.91566 0.91024 1.68906 1.05596 1.27307 1.19478 1.22783 1.00523 0.86720 0.90289 1.21091 0.92761 0.96881 1.28348 1.19959 0.75220 0.82575 0.92731 1.92927 1.46764 1.95147 1.84476 1.92885 1.79528 1.62601 1.84262 1.18102 0.89591 0.83614 0.96354 1.84620 1.78288 1.32626 1.34834 1.19285 0.77200 0.95171 1.24286 1.91246 1.29282 1.97321 1.95596 0.89622 0.82242 0.84467 0.73660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.81 11.46 21.84 0.25 -35.56 14 2 C 0.02 1.05 5.50 85.29 0.47 1.52 14 3 Si 1.00 35.19 29.56 68.60 2.03 37.21 14 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 14 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 14 6 H -0.26 -8.63 7.11 99.48 0.71 -7.92 14 7 C -0.42 -22.29 8.99 23.45 0.21 -22.08 14 8 H 0.09 4.75 7.42 -2.91 -0.02 4.73 14 9 C 0.21 11.60 6.56 40.20 0.26 11.86 14 10 N -0.50 -26.31 7.86 -189.13 -1.49 -27.79 14 11 C 0.17 7.45 10.55 84.86 0.90 8.34 14 12 C -0.38 -15.95 5.78 -19.51 -0.11 -16.06 14 13 C 0.35 11.53 5.59 71.24 0.40 11.93 14 14 F -0.21 -7.05 16.49 44.97 0.74 -6.31 14 15 F -0.21 -7.05 15.22 44.97 0.68 -6.36 14 16 C 0.17 7.82 6.65 22.74 0.15 7.98 14 17 O -0.49 -18.90 11.67 -91.53 -1.07 -19.97 14 18 C -0.14 -6.91 7.35 23.10 0.17 -6.74 14 19 F -0.16 -7.82 16.46 44.97 0.74 -7.08 14 20 H 0.29 12.68 8.29 -92.71 -0.77 11.92 14 21 H 0.16 6.25 7.60 -2.91 -0.02 6.22 14 22 H 0.14 3.65 8.14 -2.39 -0.02 3.63 14 23 H 0.40 12.18 8.75 -74.06 -0.65 11.53 14 Total: -1.00 -60.17 227.20 4.98 -55.19 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.64 Total: 13.92 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 2.45 Total: -3.25 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -1.24 Total: -63.35 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.07 Total: -19.97 kcal Atomic # 9 Polarization: -21.92 SS G_CDS: 2.17 Total: -19.75 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.21 kcal Total: -60.17 4.98 -55.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238721831.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.589 kcal (2) G-P(sol) polarization free energy of solvation -60.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds