Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86801 * 119.99726 * 2 1 4 4 H 1.48501 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47311 * 300.00118 * 3 2 1 6 6 H 1.48501 * 109.47195 * 60.00291 * 3 2 1 7 7 C 1.39993 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00391 * 179.97438 * 7 2 1 9 9 C 1.41192 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.40738 * 119.74255 * 180.02562 * 9 7 2 11 11 C 1.38077 * 119.03591 * 179.72188 * 10 9 7 12 12 F 1.35103 * 120.74821 * 180.23119 * 11 10 9 13 13 C 1.39874 * 118.50314 * 0.25834 * 11 10 9 14 14 O 1.35720 * 120.29983 * 180.02562 * 13 11 10 15 15 C 1.39355 * 119.39944 * 359.97438 * 13 11 10 16 16 C 1.50694 * 119.53287 * 179.97438 * 15 13 11 17 17 F 1.39904 * 109.47038 * 299.99552 * 16 15 13 18 18 F 1.39895 * 109.47825 * 59.99789 * 16 15 13 19 19 N 1.31356 * 120.92778 * 0.02562 * 15 13 11 20 20 H 0.96996 * 120.00431 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.48658 * 0.02562 * 10 9 7 22 22 H 0.96695 * 114.00699 * 89.99708 * 14 13 11 23 23 H 1.08997 * 109.46871 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.7017 1.3464 -0.0006 5 1 1.8829 2.3965 -1.2124 6 1 1.8830 2.3965 1.2125 7 6 2.0078 -1.2123 -0.0005 8 1 3.0878 -1.2123 -0.0010 9 6 1.3019 -2.4351 -0.0005 10 6 2.0111 -3.6507 -0.0005 11 6 1.3060 -4.8379 0.0053 12 9 1.9517 -6.0247 0.0102 13 6 -0.0917 -4.7842 0.0055 14 8 -0.8209 -5.9288 0.0117 15 6 -0.7286 -3.5447 0.0004 16 6 -2.2343 -3.4833 0.0000 17 9 -2.7270 -4.1279 -1.1398 18 9 -2.7274 -4.1186 1.1447 19 7 -0.0350 -2.4293 -0.0051 20 1 -0.4850 0.8400 0.0004 21 1 3.0911 -3.6550 -0.0001 22 1 -1.0320 -6.2560 0.8968 23 1 -2.5554 -2.4417 -0.0048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238722879.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = -164.059330 kcal Electronic energy + Delta-G solvation = -16258.411056 eV Core-core repulsion = 12849.913069 eV Total energy + Delta-G solvation = -3408.497987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.28065 -48.06584 -46.28197 -38.72970 -36.24799 -33.75536 -31.23836 -29.56247 -26.63988 -25.10186 -21.88333 -21.25237 -18.20817 -17.54128 -17.28750 -16.54425 -16.19660 -15.63785 -15.05940 -15.02271 -14.78115 -14.02751 -13.34241 -13.21352 -12.99895 -12.68682 -12.29071 -12.15330 -11.83568 -11.41549 -11.35444 -11.07753 -10.71701 -10.49198 -9.90015 -9.62139 -8.41908 -8.16336 -7.90894 -6.85431 -4.92034 2.05909 2.35372 2.90136 2.91719 2.96422 3.68454 4.21980 4.32194 4.86933 5.02582 5.15842 5.30658 5.62538 5.85923 6.20239 6.24625 6.54377 6.79584 6.85010 6.95325 7.42746 7.78376 8.13020 8.36598 8.55136 9.47038 9.89329 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.009954 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.801332 B = 2812.390333 C = 3638.074513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.063 3.937 3 Si 0.918 3.082 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.401 4.401 8 H 0.095 0.905 9 C 0.259 3.741 10 C -0.283 4.283 11 C 0.136 3.864 12 F -0.148 7.148 13 C -0.111 4.111 14 O -0.481 6.481 15 C 0.095 3.905 16 C 0.331 3.669 17 F -0.199 7.199 18 F -0.207 7.207 19 N -0.453 5.453 20 H 0.281 0.719 21 H 0.121 0.879 22 H 0.358 0.642 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 -0.080 1.499 1.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.164 4.164 3 Si 0.742 3.258 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.113 0.887 9 C 0.137 3.863 10 C -0.308 4.308 11 C 0.112 3.888 12 F -0.127 7.127 13 C -0.163 4.163 14 O -0.286 6.286 15 C -0.055 4.055 16 C 0.276 3.724 17 F -0.181 7.181 18 F -0.189 7.189 19 N -0.168 5.168 20 H 0.092 0.908 21 H 0.139 0.861 22 H 0.210 0.790 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.465 0.872 0.862 1.911 hybrid contribution 0.868 -0.568 0.553 1.175 sum -0.598 0.304 1.415 1.566 Atomic orbital electron populations 1.70075 1.07517 1.28877 1.26023 1.26182 0.95101 1.01757 0.93382 0.86073 0.80779 0.80045 0.78947 1.18063 1.19433 1.19440 1.19771 0.94924 0.88877 1.39503 0.88666 1.18272 0.87002 0.91654 0.89398 1.21817 1.00175 0.91283 1.17477 1.18098 0.89596 0.80570 1.00584 1.91380 1.81780 1.45548 1.93975 1.18612 0.87867 0.86493 1.23291 1.84910 1.72823 1.39299 1.31533 1.21705 0.94921 0.89552 0.99305 1.20118 0.88411 0.93188 0.70675 1.92963 1.88737 1.84799 1.51567 1.92915 1.88913 1.85345 1.51682 1.68357 1.07830 1.24152 1.16446 0.90789 0.86084 0.79046 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.72 11.45 55.55 0.64 -16.08 14 2 C 0.06 1.43 5.50 -17.34 -0.10 1.34 14 3 Si 0.92 16.60 29.56 -169.99 -5.02 11.58 14 4 H -0.26 -4.57 7.11 56.52 0.40 -4.16 14 5 H -0.27 -4.84 7.11 56.52 0.40 -4.43 14 6 H -0.27 -4.82 7.11 56.52 0.40 -4.41 14 7 C -0.40 -9.65 9.13 -37.80 -0.35 -9.99 14 8 H 0.10 2.10 7.85 -52.49 -0.41 1.69 14 9 C 0.26 6.59 6.55 -84.99 -0.56 6.03 14 10 C -0.28 -6.71 9.82 -38.70 -0.38 -7.09 14 11 C 0.14 3.22 7.38 -39.03 -0.29 2.93 14 12 F -0.15 -3.30 17.18 2.25 0.04 -3.27 14 13 C -0.11 -2.62 6.64 -38.55 -0.26 -2.88 14 14 O -0.48 -10.40 12.31 -18.87 -0.23 -10.63 14 15 C 0.10 2.27 6.30 -82.38 -0.52 1.75 14 16 C 0.33 6.82 5.22 36.00 0.19 7.00 14 17 F -0.20 -4.21 16.96 2.25 0.04 -4.18 14 18 F -0.21 -4.07 16.95 2.25 0.04 -4.03 14 19 N -0.45 -11.58 7.73 -7.26 -0.06 -11.64 14 20 H 0.28 5.92 8.29 -40.82 -0.34 5.58 14 21 H 0.12 2.60 8.06 -52.49 -0.42 2.17 14 22 H 0.36 6.26 9.06 45.56 0.41 6.67 14 23 H 0.13 2.38 8.10 -51.93 -0.42 1.96 14 LS Contribution 231.34 15.07 3.49 3.49 Total: -1.00 -27.29 231.34 -3.30 -30.59 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.02 Total: 5.07 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.25 Total: -0.90 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.58 Total: -27.72 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.23 Total: -10.63 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 0.12 Total: -11.47 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.02 Total: 11.58 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.29 -3.30 -30.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238722879.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.469 kcal (2) G-P(sol) polarization free energy of solvation -27.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds