Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86801 * 119.99726 * 2 1 4 4 H 1.48501 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47311 * 300.00118 * 3 2 1 6 6 H 1.48501 * 109.47195 * 60.00291 * 3 2 1 7 7 C 1.39993 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00391 * 179.97438 * 7 2 1 9 9 C 1.41192 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.40738 * 119.74255 * 180.02562 * 9 7 2 11 11 C 1.38077 * 119.03591 * 179.72188 * 10 9 7 12 12 F 1.35103 * 120.74821 * 180.23119 * 11 10 9 13 13 C 1.39874 * 118.50314 * 0.25834 * 11 10 9 14 14 O 1.35720 * 120.29983 * 180.02562 * 13 11 10 15 15 C 1.39355 * 119.39944 * 359.97438 * 13 11 10 16 16 C 1.50694 * 119.53287 * 179.97438 * 15 13 11 17 17 F 1.39904 * 109.47038 * 299.99552 * 16 15 13 18 18 F 1.39895 * 109.47825 * 59.99789 * 16 15 13 19 19 N 1.31356 * 120.92778 * 0.02562 * 15 13 11 20 20 H 0.96996 * 120.00431 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.48658 * 0.02562 * 10 9 7 22 22 H 0.96695 * 114.00699 * 89.99708 * 14 13 11 23 23 H 1.08997 * 109.46871 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.7017 1.3464 -0.0006 5 1 1.8829 2.3965 -1.2124 6 1 1.8830 2.3965 1.2125 7 6 2.0078 -1.2123 -0.0005 8 1 3.0878 -1.2123 -0.0010 9 6 1.3019 -2.4351 -0.0005 10 6 2.0111 -3.6507 -0.0005 11 6 1.3060 -4.8379 0.0053 12 9 1.9517 -6.0247 0.0102 13 6 -0.0917 -4.7842 0.0055 14 8 -0.8209 -5.9288 0.0117 15 6 -0.7286 -3.5447 0.0004 16 6 -2.2343 -3.4833 0.0000 17 9 -2.7270 -4.1279 -1.1398 18 9 -2.7274 -4.1186 1.1447 19 7 -0.0350 -2.4293 -0.0051 20 1 -0.4850 0.8400 0.0004 21 1 3.0911 -3.6550 -0.0001 22 1 -1.0320 -6.2560 0.8968 23 1 -2.5554 -2.4417 -0.0048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238722879.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = -181.832076 kcal Electronic energy + Delta-G solvation = -16259.181740 eV Core-core repulsion = 12849.913069 eV Total energy + Delta-G solvation = -3409.268671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.92391 -49.86841 -47.92279 -40.52811 -37.99908 -35.50047 -33.03685 -31.36836 -28.39554 -26.86373 -23.69392 -23.02102 -19.98072 -19.28666 -19.03024 -18.19547 -17.90791 -17.35550 -16.81149 -16.70108 -16.54643 -15.78990 -14.96931 -14.87766 -14.73058 -14.32474 -14.03137 -13.90815 -13.53888 -13.07709 -12.85766 -12.77007 -12.39509 -12.01197 -11.62010 -11.28112 -10.26323 -9.97852 -9.73052 -8.56665 -6.74339 0.26049 0.52248 1.44923 1.48884 1.60851 2.18280 2.49531 2.62550 3.15299 3.31270 3.39726 3.54156 3.94862 4.18511 4.41625 4.46854 4.77887 5.00046 5.11134 5.15155 5.65924 6.00457 6.35091 6.59821 6.88166 7.64280 8.22485 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.009954 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.801332 B = 2812.390333 C = 3638.074513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.022 3.978 3 Si 0.997 3.003 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.419 4.419 8 H 0.108 0.892 9 C 0.228 3.772 10 C -0.291 4.291 11 C 0.127 3.873 12 F -0.143 7.143 13 C -0.121 4.121 14 O -0.485 6.485 15 C 0.081 3.919 16 C 0.339 3.661 17 F -0.202 7.202 18 F -0.201 7.201 19 N -0.474 5.474 20 H 0.291 0.709 21 H 0.137 0.863 22 H 0.378 0.622 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 0.866 1.644 1.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.202 4.202 3 Si 0.816 3.184 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.448 4.448 8 H 0.126 0.874 9 C 0.105 3.895 10 C -0.315 4.315 11 C 0.102 3.898 12 F -0.121 7.121 13 C -0.173 4.173 14 O -0.293 6.293 15 C -0.069 4.069 16 C 0.284 3.716 17 F -0.184 7.184 18 F -0.182 7.182 19 N -0.189 5.189 20 H 0.102 0.898 21 H 0.155 0.845 22 H 0.232 0.768 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.106 1.783 1.018 2.333 hybrid contribution 0.727 -0.922 0.521 1.284 sum -0.380 0.862 1.540 1.805 Atomic orbital electron populations 1.70119 1.09094 1.30566 1.25759 1.27104 0.95863 1.04885 0.92393 0.84912 0.79447 0.75038 0.78989 1.17384 1.19032 1.18877 1.20219 0.95808 0.89384 1.39426 0.87383 1.18731 0.87502 0.92802 0.90440 1.21968 1.01007 0.90987 1.17509 1.18218 0.89898 0.80840 1.00802 1.91384 1.81677 1.45121 1.93951 1.18724 0.88101 0.87072 1.23356 1.84836 1.72517 1.38607 1.33294 1.22157 0.96418 0.89381 0.98930 1.20093 0.86804 0.93983 0.70698 1.92955 1.88581 1.84972 1.51847 1.92924 1.88624 1.85343 1.51311 1.68365 1.08173 1.24956 1.17438 0.89764 0.84509 0.76828 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -34.40 11.45 21.83 0.25 -34.15 14 2 C 0.02 0.99 5.50 85.28 0.47 1.46 14 3 Si 1.00 32.70 29.56 68.60 2.03 34.73 14 4 H -0.25 -7.89 7.11 99.48 0.71 -7.18 14 5 H -0.27 -8.51 7.11 99.48 0.71 -7.80 14 6 H -0.26 -8.39 7.11 99.48 0.71 -7.69 14 7 C -0.42 -19.93 9.13 23.42 0.21 -19.72 14 8 H 0.11 4.66 7.85 -2.91 -0.02 4.64 14 9 C 0.23 11.57 6.55 40.20 0.26 11.83 14 10 C -0.29 -13.73 9.82 22.84 0.22 -13.51 14 11 C 0.13 5.97 7.38 22.63 0.17 6.14 14 12 F -0.14 -6.26 17.18 44.97 0.77 -5.48 14 13 C -0.12 -5.65 6.64 22.94 0.15 -5.50 14 14 O -0.49 -20.46 12.31 -90.43 -1.11 -21.58 14 15 C 0.08 3.84 6.30 42.90 0.27 4.11 14 16 C 0.34 13.65 5.22 71.23 0.37 14.02 14 17 F -0.20 -8.34 16.96 44.97 0.76 -7.58 14 18 F -0.20 -7.62 16.95 44.97 0.76 -6.86 14 19 N -0.47 -24.27 7.73 -176.87 -1.37 -25.63 14 20 H 0.29 12.02 8.29 -92.71 -0.77 11.25 14 21 H 0.14 5.80 8.06 -2.91 -0.02 5.78 14 22 H 0.38 12.68 9.06 -74.06 -0.67 12.01 14 23 H 0.14 5.28 8.10 -2.39 -0.02 5.26 14 Total: -1.00 -56.29 231.34 4.84 -51.45 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.61 Total: 16.27 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 2.13 Total: -1.17 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -1.12 Total: -59.78 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.11 Total: -21.58 kcal Atomic # 9 Polarization: -22.22 SS G_CDS: 2.30 Total: -19.92 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Total: -56.29 4.84 -51.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238722879.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.381 kcal (2) G-P(sol) polarization free energy of solvation -56.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds