Wall clock time and date at job start Mon Mar 30 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48494 * 109.47220 * 240.00262 * 3 2 1 5 5 H 1.48499 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47299 * 120.00085 * 3 2 1 7 7 C 1.39926 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 161.13425 * 7 2 1 9 9 C 1.41231 * 119.99905 * 341.13603 * 7 2 1 10 10 C 1.41671 * 120.70233 * 321.03595 * 9 7 2 11 11 O 1.35586 * 120.97483 * 359.95392 * 10 9 7 12 12 C 1.39039 * 118.04056 * 179.97438 * 10 9 7 13 13 F 1.35106 * 120.34332 * 179.97438 * 12 10 9 14 14 C 1.38354 * 119.31225 * 359.97438 * 12 10 9 15 15 N 1.32218 * 121.38204 * 0.02562 * 14 12 10 16 16 C 1.31458 * 122.17871 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.75772 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.47071 * 21.98777 * 17 16 15 19 19 F 1.39906 * 109.47289 * 141.98590 * 17 16 15 20 20 H 0.97002 * 120.00126 * 359.97438 * 1 2 3 21 21 H 0.96702 * 114.00012 * 264.56686 * 11 10 9 22 22 H 1.07997 * 119.30730 * 179.97438 * 14 12 10 23 23 H 1.09003 * 109.47813 * 261.98589 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2118 -0.0005 8 1 3.0448 -1.2368 -0.3030 9 6 1.3590 -2.4022 0.3944 10 6 0.4427 -2.4022 1.4749 11 8 0.1672 -1.2627 2.1561 12 6 -0.1652 -3.6050 1.8164 13 9 -1.0461 -3.6583 2.8394 14 6 0.1412 -4.7469 1.0977 15 7 1.0006 -4.7183 0.0933 16 6 1.6076 -3.6128 -0.2775 17 6 2.5779 -3.6428 -1.4301 18 9 2.3087 -4.7531 -2.2376 19 9 2.4413 -2.4730 -2.1853 20 1 -0.4850 0.8400 0.0004 21 1 0.6918 -1.1487 2.9604 22 1 -0.3307 -5.6812 1.3633 23 1 3.5960 -3.7107 -1.0466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238724233.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:15 Heat of formation + Delta-G solvation = -160.853276 kcal Electronic energy + Delta-G solvation = -16551.083232 eV Core-core repulsion = 13142.724270 eV Total energy + Delta-G solvation = -3408.358962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.98409 -47.95209 -45.96816 -38.76977 -36.10671 -33.87746 -30.81170 -29.83830 -26.41904 -24.89707 -22.04944 -21.04040 -18.00373 -17.52774 -16.81559 -16.50902 -16.06620 -15.63094 -15.17440 -15.12491 -14.54541 -13.61174 -13.15460 -13.09782 -12.79193 -12.40180 -12.33302 -12.19948 -11.86608 -11.63611 -11.30251 -11.01393 -10.62118 -10.51338 -9.46315 -9.35193 -8.54295 -8.03032 -7.83367 -7.03709 -4.74609 2.04000 2.41081 2.97409 2.99104 3.00368 3.77280 4.30308 4.62066 4.91294 4.99644 5.21570 5.39086 5.64419 5.90368 6.10198 6.26478 6.66657 6.81485 6.97508 7.11977 7.50878 7.91476 8.16456 8.42810 8.80782 9.07387 9.93998 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.015114 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.892234 B = 1852.100304 C = 3054.113455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.093 0.907 9 C 0.091 3.909 10 C 0.041 3.959 11 O -0.454 6.454 12 C 0.052 3.948 13 F -0.150 7.150 14 C -0.056 4.056 15 N -0.414 5.414 16 C -0.075 4.075 17 C 0.351 3.649 18 F -0.207 7.207 19 F -0.190 7.190 20 H 0.289 0.711 21 H 0.357 0.643 22 H 0.140 0.860 23 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -0.072 1.886 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.458 4.458 8 H 0.110 0.890 9 C 0.085 3.915 10 C -0.012 4.012 11 O -0.259 6.259 12 C 0.029 3.971 13 F -0.129 7.129 14 C -0.215 4.215 15 N -0.121 5.121 16 C -0.219 4.219 17 C 0.296 3.704 18 F -0.188 7.188 19 F -0.171 7.171 20 H 0.100 0.900 21 H 0.209 0.791 22 H 0.158 0.842 23 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.492 -0.581 0.967 3.670 hybrid contribution 0.066 1.479 1.008 1.791 sum 3.558 0.898 1.975 4.167 Atomic orbital electron populations 1.69697 1.07946 1.30524 1.27234 1.25839 0.94640 1.01279 0.92427 0.86261 0.80136 0.79737 0.80139 1.18662 1.20143 1.18638 1.19427 0.98727 0.90793 1.36895 0.88955 1.18198 0.89900 0.93193 0.90244 1.18667 1.02599 0.83815 0.96157 1.84954 1.63157 1.38424 1.39342 1.19302 0.92996 0.95941 0.88812 1.91363 1.66738 1.97298 1.57497 1.21543 1.04764 0.96344 0.98882 1.66571 1.04669 1.29281 1.11625 1.21263 1.07869 0.91354 1.01377 1.19539 0.97930 0.70822 0.82072 1.92919 1.95846 1.54216 1.75860 1.93008 1.97324 1.48983 1.77759 0.89999 0.79084 0.84237 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.38 11.20 55.55 0.62 -17.76 14 2 C 0.08 1.96 4.51 -17.33 -0.08 1.88 14 3 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 14 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 14 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 14 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 14 7 C -0.43 -10.33 6.81 -37.81 -0.26 -10.59 14 8 H 0.09 2.07 7.23 -52.49 -0.38 1.69 14 9 C 0.09 2.24 5.35 -106.53 -0.57 1.68 14 10 C 0.04 1.00 6.25 -37.98 -0.24 0.77 14 11 O -0.45 -10.43 10.46 -18.45 -0.19 -10.62 14 12 C 0.05 1.21 7.34 -39.24 -0.29 0.92 14 13 F -0.15 -3.31 17.17 2.25 0.04 -3.27 14 14 C -0.06 -1.27 11.14 -17.34 -0.19 -1.47 14 15 N -0.41 -9.86 9.84 -8.85 -0.09 -9.95 14 16 C -0.08 -1.80 6.65 -81.84 -0.54 -2.34 14 17 C 0.35 7.36 5.28 36.00 0.19 7.55 14 18 F -0.21 -4.42 16.98 2.25 0.04 -4.38 14 19 F -0.19 -4.25 14.88 2.25 0.03 -4.21 14 20 H 0.29 6.66 8.30 -40.82 -0.34 6.32 14 21 H 0.36 6.51 9.06 45.56 0.41 6.92 14 22 H 0.14 2.75 8.06 -52.49 -0.42 2.33 14 23 H 0.10 1.72 8.14 -51.93 -0.42 1.30 14 LS Contribution 225.56 15.07 3.40 3.40 Total: -1.00 -28.23 225.56 -3.10 -31.33 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.05 Total: 4.71 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.98 Total: -1.61 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.53 Total: -27.71 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.19 Total: -10.62 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 0.11 Total: -11.87 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.23 -3.10 -31.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724233.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.523 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds