Wall clock time and date at job start Mon Mar 30 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48494 * 109.47220 * 240.00262 * 3 2 1 5 5 H 1.48499 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47299 * 120.00085 * 3 2 1 7 7 C 1.39926 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 161.13425 * 7 2 1 9 9 C 1.41231 * 119.99905 * 341.13603 * 7 2 1 10 10 C 1.41671 * 120.70233 * 321.03595 * 9 7 2 11 11 O 1.35586 * 120.97483 * 359.95392 * 10 9 7 12 12 C 1.39039 * 118.04056 * 179.97438 * 10 9 7 13 13 F 1.35106 * 120.34332 * 179.97438 * 12 10 9 14 14 C 1.38354 * 119.31225 * 359.97438 * 12 10 9 15 15 N 1.32218 * 121.38204 * 0.02562 * 14 12 10 16 16 C 1.31458 * 122.17871 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.75772 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.47071 * 21.98777 * 17 16 15 19 19 F 1.39906 * 109.47289 * 141.98590 * 17 16 15 20 20 H 0.97002 * 120.00126 * 359.97438 * 1 2 3 21 21 H 0.96702 * 114.00012 * 264.56686 * 11 10 9 22 22 H 1.07997 * 119.30730 * 179.97438 * 14 12 10 23 23 H 1.09003 * 109.47813 * 261.98589 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2118 -0.0005 8 1 3.0448 -1.2368 -0.3030 9 6 1.3590 -2.4022 0.3944 10 6 0.4427 -2.4022 1.4749 11 8 0.1672 -1.2627 2.1561 12 6 -0.1652 -3.6050 1.8164 13 9 -1.0461 -3.6583 2.8394 14 6 0.1412 -4.7469 1.0977 15 7 1.0006 -4.7183 0.0933 16 6 1.6076 -3.6128 -0.2775 17 6 2.5779 -3.6428 -1.4301 18 9 2.3087 -4.7531 -2.2376 19 9 2.4413 -2.4730 -2.1853 20 1 -0.4850 0.8400 0.0004 21 1 0.6918 -1.1487 2.9604 22 1 -0.3307 -5.6812 1.3633 23 1 3.5960 -3.7107 -1.0466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238724233.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:15 Heat of formation + Delta-G solvation = -179.864406 kcal Electronic energy + Delta-G solvation = -16551.907616 eV Core-core repulsion = 13142.724270 eV Total energy + Delta-G solvation = -3409.183347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.76914 -49.63457 -47.65993 -40.56058 -37.89367 -35.64867 -32.59703 -31.63865 -28.18855 -26.63757 -23.85023 -22.81325 -19.79263 -19.29207 -18.56446 -18.16684 -17.81159 -17.40145 -16.93532 -16.80080 -16.30614 -15.33103 -14.92773 -14.76473 -14.49358 -14.16796 -14.04824 -13.97198 -13.56108 -13.35518 -12.85717 -12.74702 -12.19500 -12.12316 -11.17137 -11.11322 -10.35623 -9.84954 -9.64000 -8.78036 -6.56376 0.22135 0.61476 1.43408 1.51014 1.54992 2.19506 2.54653 2.96610 3.15904 3.34863 3.45991 3.62435 3.94923 4.28001 4.40862 4.48826 4.89216 5.05140 5.21501 5.32893 5.73722 6.13612 6.39513 6.64546 7.13135 7.26174 8.21971 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.015114 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.892234 B = 1852.100304 C = 3054.113455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.048 3.952 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.446 4.446 8 H 0.103 0.897 9 C 0.066 3.934 10 C 0.028 3.972 11 O -0.465 6.465 12 C 0.042 3.958 13 F -0.145 7.145 14 C -0.057 4.057 15 N -0.426 5.426 16 C -0.091 4.091 17 C 0.349 3.651 18 F -0.210 7.210 19 F -0.200 7.200 20 H 0.292 0.708 21 H 0.376 0.624 22 H 0.168 0.832 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 0.373 2.036 5.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.174 4.174 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.473 4.473 8 H 0.121 0.879 9 C 0.061 3.939 10 C -0.025 4.025 11 O -0.272 6.272 12 C 0.020 3.980 13 F -0.124 7.124 14 C -0.216 4.216 15 N -0.134 5.134 16 C -0.234 4.234 17 C 0.295 3.705 18 F -0.192 7.192 19 F -0.181 7.181 20 H 0.103 0.897 21 H 0.230 0.770 22 H 0.185 0.815 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.468 -0.152 1.127 4.611 hybrid contribution -0.285 1.275 0.994 1.641 sum 4.183 1.123 2.121 4.823 Atomic orbital electron populations 1.69770 1.09646 1.31567 1.28745 1.26687 0.95101 1.04406 0.91211 0.85210 0.78707 0.75225 0.80475 1.18268 1.20068 1.17496 1.19706 0.99223 0.91108 1.37218 0.87903 1.18522 0.90586 0.94056 0.90774 1.18906 1.02844 0.84313 0.96478 1.84883 1.63814 1.38184 1.40325 1.19396 0.93295 0.96065 0.89268 1.91368 1.66531 1.97282 1.57214 1.22012 1.04173 0.97218 0.98195 1.66663 1.05204 1.29392 1.12146 1.21746 1.08344 0.91198 1.02121 1.19896 0.99288 0.70245 0.81074 1.92908 1.96020 1.54345 1.75913 1.92982 1.97460 1.49693 1.77982 0.89680 0.76968 0.81538 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.72 11.20 21.83 0.24 -38.48 14 2 C 0.05 2.19 4.51 85.25 0.38 2.57 14 3 Si 0.98 34.57 29.60 68.60 2.03 36.60 14 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 5 H -0.28 -9.57 7.11 99.48 0.71 -8.86 14 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 14 7 C -0.45 -20.92 6.81 23.41 0.16 -20.76 14 8 H 0.10 4.46 7.23 -2.91 -0.02 4.44 14 9 C 0.07 3.26 5.35 -21.10 -0.11 3.15 14 10 C 0.03 1.36 6.25 23.31 0.15 1.51 14 11 O -0.46 -21.19 10.46 -88.95 -0.93 -22.12 14 12 C 0.04 1.93 7.34 22.49 0.17 2.09 14 13 F -0.14 -6.27 17.17 44.97 0.77 -5.50 14 14 C -0.06 -2.51 11.14 84.66 0.94 -1.57 14 15 N -0.43 -19.85 9.84 -181.91 -1.79 -21.64 14 16 C -0.09 -4.27 6.65 43.21 0.29 -3.99 14 17 C 0.35 14.07 5.28 71.23 0.38 14.45 14 18 F -0.21 -8.68 16.98 44.97 0.76 -7.92 14 19 F -0.20 -8.72 14.88 44.97 0.67 -8.05 14 20 H 0.29 13.46 8.30 -92.71 -0.77 12.69 14 21 H 0.38 13.47 9.06 -74.06 -0.67 12.80 14 22 H 0.17 6.24 8.06 -2.91 -0.02 6.22 14 23 H 0.15 4.56 8.14 -2.39 -0.02 4.54 14 Total: -1.00 -58.35 225.56 4.72 -53.63 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.62 Total: 16.03 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 2.35 Total: -2.54 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.55 Total: -60.12 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.93 Total: -22.12 kcal Atomic # 9 Polarization: -23.67 SS G_CDS: 2.20 Total: -21.47 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Total: -58.35 4.72 -53.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724233.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.237 kcal (2) G-P(sol) polarization free energy of solvation -58.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds