Wall clock time and date at job start Mon Mar 30 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86800 * 119.99754 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00125 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00555 * 3 2 1 6 6 H 1.48507 * 109.46754 * 150.00386 * 3 2 1 7 7 C 1.39994 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.33708 * 119.77301 * 0.02562 * 9 7 2 11 11 C 1.31457 * 121.66729 * 180.02562 * 10 9 7 12 12 C 1.38867 * 121.02466 * 359.96881 * 11 10 9 13 13 F 1.35102 * 120.28223 * 180.02562 * 12 11 10 14 14 C 1.39759 * 119.43985 * 0.02986 * 12 11 10 15 15 O 1.35814 * 120.76861 * 180.02562 * 14 12 11 16 16 C 1.38636 * 118.46681 * 359.71796 * 14 12 11 17 17 C 1.50696 * 120.52782 * 180.26441 * 16 14 12 18 18 F 1.39901 * 109.46873 * 120.25977 * 17 16 14 19 19 F 1.39901 * 109.47593 * 240.26002 * 17 16 14 20 20 H 0.96999 * 120.00085 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.48615 * 180.02562 * 11 10 9 22 22 H 0.96700 * 114.00363 * 89.99591 * 15 14 12 23 23 H 1.09000 * 109.47297 * 0.25937 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4891 2.0465 -1.4001 5 1 1.4391 2.6527 0.7001 6 1 3.5393 1.4401 0.7000 7 6 2.0077 -1.2124 -0.0005 8 1 3.0877 -1.2125 -0.0010 9 6 1.3010 -2.4364 -0.0005 10 7 -0.0360 -2.4311 -0.0005 11 6 -0.7305 -3.5473 0.0000 12 6 -0.0983 -4.7837 -0.0001 13 9 -0.8269 -5.9214 -0.0001 14 6 1.2981 -4.8411 -0.0001 15 8 1.9443 -6.0357 -0.0008 16 6 2.0085 -3.6506 -0.0060 17 6 3.5154 -3.6584 -0.0123 18 9 3.9804 -2.9990 -1.1552 19 9 3.9900 -3.0037 1.1293 20 1 -0.4850 0.8400 0.0004 21 1 -1.8095 -3.5019 -0.0005 22 1 2.1314 -6.3813 -0.8843 23 1 3.8734 -4.6880 -0.0159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238724302.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:25 Heat of formation + Delta-G solvation = -162.655848 kcal Electronic energy + Delta-G solvation = -16442.854739 eV Core-core repulsion = 13034.417611 eV Total energy + Delta-G solvation = -3408.437128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.05021 -47.57923 -46.00448 -38.80312 -36.64571 -33.75736 -31.11111 -29.53965 -26.50005 -24.85459 -22.03137 -21.06232 -18.63114 -17.35502 -16.77377 -16.51349 -16.24374 -15.39788 -15.18178 -14.88284 -14.58974 -14.07764 -13.28807 -12.96410 -12.78781 -12.42266 -12.32369 -12.01641 -11.81292 -11.58977 -11.26506 -11.01803 -10.55301 -10.41975 -9.77009 -9.53171 -8.48665 -8.06117 -7.82283 -6.79396 -4.88638 2.15726 2.32459 2.96773 2.98901 3.03544 3.75932 4.33341 4.63085 4.71956 5.06693 5.35492 5.53214 5.72629 5.89858 6.05215 6.32813 6.50214 6.79807 6.83484 7.09324 7.42768 7.91928 8.04110 8.29041 8.49863 9.60397 9.93536 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.011691 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.439772 B = 2394.428403 C = 3238.837806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.388 4.388 8 H 0.098 0.902 9 C 0.267 3.733 10 N -0.461 5.461 11 C 0.143 3.857 12 C -0.151 4.151 13 F -0.160 7.160 14 C 0.178 3.822 15 O -0.499 6.499 16 C -0.348 4.348 17 C 0.341 3.659 18 F -0.209 7.209 19 F -0.206 7.206 20 H 0.281 0.719 21 H 0.140 0.860 22 H 0.385 0.615 23 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -2.580 -1.643 4.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.166 4.166 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.416 4.416 8 H 0.116 0.884 9 C 0.146 3.854 10 N -0.172 5.172 11 C -0.030 4.030 12 C -0.175 4.175 13 F -0.140 7.140 14 C 0.127 3.873 15 O -0.308 6.308 16 C -0.354 4.354 17 C 0.287 3.713 18 F -0.190 7.190 19 F -0.187 7.187 20 H 0.093 0.907 21 H 0.157 0.843 22 H 0.240 0.760 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.437 -1.508 -1.025 3.043 hybrid contribution 0.637 -0.411 -0.489 0.902 sum 3.074 -1.919 -1.514 3.927 Atomic orbital electron populations 1.70107 1.07475 1.28998 1.25017 1.26232 0.95090 1.01894 0.93405 0.86144 0.80655 0.79540 0.79731 1.18883 1.19686 1.17934 1.20016 0.95366 0.89059 1.37176 0.88387 1.18202 0.87881 0.90807 0.88512 1.68909 1.06898 1.24788 1.16598 1.22857 1.00060 0.86612 0.93450 1.18694 0.88366 0.83361 1.27122 1.91289 1.77218 1.49381 1.96118 1.18121 0.88530 0.83852 0.96831 1.84704 1.78222 1.34843 1.33072 1.20993 0.94082 0.94081 1.26289 1.19598 0.89877 0.90851 0.70974 1.92939 1.90053 1.84252 1.51770 1.92941 1.89671 1.84293 1.51820 0.90749 0.84313 0.75961 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.37 11.46 55.55 0.64 -16.73 14 2 C 0.06 1.50 5.50 -17.35 -0.10 1.40 14 3 Si 0.92 17.87 29.56 -169.99 -5.02 12.84 14 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 14 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 14 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 7 C -0.39 -10.00 8.19 -37.75 -0.31 -10.31 14 8 H 0.10 2.47 5.50 -52.49 -0.29 2.18 14 9 C 0.27 7.01 6.54 -85.01 -0.56 6.46 14 10 N -0.46 -12.08 7.85 -11.12 -0.09 -12.17 14 11 C 0.14 3.34 11.16 -17.48 -0.20 3.15 14 12 C -0.15 -3.45 7.38 -38.78 -0.29 -3.73 14 13 F -0.16 -3.51 17.17 2.25 0.04 -3.47 14 14 C 0.18 3.95 6.74 -38.87 -0.26 3.69 14 15 O -0.50 -9.25 12.31 -19.16 -0.24 -9.48 14 16 C -0.35 -8.22 5.45 -103.61 -0.56 -8.78 14 17 C 0.34 7.10 4.91 36.00 0.18 7.28 14 18 F -0.21 -4.43 16.04 2.25 0.04 -4.40 14 19 F -0.21 -4.55 16.03 2.25 0.04 -4.52 14 20 H 0.28 6.26 8.29 -40.82 -0.34 5.92 14 21 H 0.14 2.85 8.06 -52.49 -0.42 2.42 14 22 H 0.39 5.08 9.06 45.56 0.41 5.49 14 23 H 0.10 1.70 7.09 -51.93 -0.37 1.33 14 LS Contribution 225.60 15.07 3.40 3.40 Total: -1.00 -28.90 225.60 -3.09 -31.99 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 0.20 Total: 3.38 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.09 Total: -0.85 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.55 Total: -28.90 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.24 Total: -9.48 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 0.11 Total: -12.39 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.84 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.90 -3.09 -31.99 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724302.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.668 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds