Wall clock time and date at job start Mon Mar 30 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86800 * 119.99754 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00125 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00555 * 3 2 1 6 6 H 1.48507 * 109.46754 * 150.00386 * 3 2 1 7 7 C 1.39994 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.33708 * 119.77301 * 0.02562 * 9 7 2 11 11 C 1.31457 * 121.66729 * 180.02562 * 10 9 7 12 12 C 1.38867 * 121.02466 * 359.96881 * 11 10 9 13 13 F 1.35102 * 120.28223 * 180.02562 * 12 11 10 14 14 C 1.39759 * 119.43985 * 0.02986 * 12 11 10 15 15 O 1.35814 * 120.76861 * 180.02562 * 14 12 11 16 16 C 1.38636 * 118.46681 * 359.71796 * 14 12 11 17 17 C 1.50696 * 120.52782 * 180.26441 * 16 14 12 18 18 F 1.39901 * 109.46873 * 120.25977 * 17 16 14 19 19 F 1.39901 * 109.47593 * 240.26002 * 17 16 14 20 20 H 0.96999 * 120.00085 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.48615 * 180.02562 * 11 10 9 22 22 H 0.96700 * 114.00363 * 89.99591 * 15 14 12 23 23 H 1.09000 * 109.47297 * 0.25937 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4891 2.0465 -1.4001 5 1 1.4391 2.6527 0.7001 6 1 3.5393 1.4401 0.7000 7 6 2.0077 -1.2124 -0.0005 8 1 3.0877 -1.2125 -0.0010 9 6 1.3010 -2.4364 -0.0005 10 7 -0.0360 -2.4311 -0.0005 11 6 -0.7305 -3.5473 0.0000 12 6 -0.0983 -4.7837 -0.0001 13 9 -0.8269 -5.9214 -0.0001 14 6 1.2981 -4.8411 -0.0001 15 8 1.9443 -6.0357 -0.0008 16 6 2.0085 -3.6506 -0.0060 17 6 3.5154 -3.6584 -0.0123 18 9 3.9804 -2.9990 -1.1552 19 9 3.9900 -3.0037 1.1293 20 1 -0.4850 0.8400 0.0004 21 1 -1.8095 -3.5019 -0.0005 22 1 2.1314 -6.3813 -0.8843 23 1 3.8734 -4.6880 -0.0159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238724302.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:25 Heat of formation + Delta-G solvation = -182.389389 kcal Electronic energy + Delta-G solvation = -16443.710450 eV Core-core repulsion = 13034.417611 eV Total energy + Delta-G solvation = -3409.292838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.71834 -49.34857 -47.68208 -40.55630 -38.29357 -35.55982 -32.88709 -31.33535 -28.29519 -26.61116 -23.81147 -22.82732 -20.33919 -19.09348 -18.48184 -18.22307 -17.92084 -17.11444 -16.92537 -16.59456 -16.31123 -15.75024 -14.95577 -14.65293 -14.53206 -14.10698 -14.01995 -13.83741 -13.47789 -13.29302 -12.85549 -12.78515 -12.21948 -12.02379 -11.44877 -11.26688 -10.27437 -9.88462 -9.65562 -8.57214 -6.77581 0.38054 0.53953 1.38142 1.46376 1.53200 2.15534 2.55236 3.05892 3.07299 3.41778 3.50622 3.83713 4.00396 4.17249 4.38577 4.53138 4.76182 4.99376 5.10338 5.28712 5.73251 6.03669 6.32428 6.62196 6.73951 7.76827 8.19182 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.011691 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.439772 B = 2394.428403 C = 3238.837806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.022 3.978 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.096 0.904 9 C 0.240 3.760 10 N -0.494 5.494 11 C 0.135 3.865 12 C -0.158 4.158 13 F -0.155 7.155 14 C 0.189 3.811 15 O -0.494 6.494 16 C -0.365 4.365 17 C 0.341 3.659 18 F -0.213 7.213 19 F -0.216 7.216 20 H 0.290 0.710 21 H 0.161 0.839 22 H 0.412 0.588 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -2.834 -1.802 5.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.203 4.203 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.181 1.181 7 C -0.446 4.446 8 H 0.114 0.886 9 C 0.119 3.881 10 N -0.206 5.206 11 C -0.036 4.036 12 C -0.183 4.183 13 F -0.134 7.134 14 C 0.138 3.862 15 O -0.307 6.307 16 C -0.371 4.371 17 C 0.288 3.712 18 F -0.194 7.194 19 F -0.197 7.197 20 H 0.101 0.899 21 H 0.178 0.822 22 H 0.272 0.728 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.163 -1.806 -1.205 3.836 hybrid contribution 0.373 -0.491 -0.451 0.764 sum 3.535 -2.297 -1.656 4.529 Atomic orbital electron populations 1.70151 1.08843 1.30451 1.25506 1.27087 0.95872 1.04859 0.92507 0.85114 0.79080 0.75207 0.80000 1.18125 1.18345 1.18124 1.20254 0.95454 0.90124 1.38788 0.88636 1.18624 0.88413 0.92153 0.88950 1.68867 1.07385 1.26103 1.18265 1.23216 1.01105 0.86490 0.92780 1.18789 0.88966 0.83412 1.27138 1.91301 1.77129 1.48880 1.96108 1.18053 0.88328 0.84692 0.95160 1.84638 1.77565 1.33073 1.35395 1.21279 0.95797 0.93812 1.26198 1.19905 0.88444 0.92493 0.70403 1.92924 1.89903 1.84615 1.51987 1.92917 1.89600 1.84752 1.52431 0.89857 0.82226 0.72772 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.68 11.46 21.83 0.25 -36.43 14 2 C 0.02 1.06 5.50 85.28 0.47 1.53 14 3 Si 0.99 36.30 29.56 68.60 2.03 38.33 14 4 H -0.26 -9.07 7.11 99.48 0.71 -8.37 14 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 7 C -0.42 -21.73 8.19 23.46 0.19 -21.53 14 8 H 0.10 4.84 5.50 -2.91 -0.02 4.83 14 9 C 0.24 12.68 6.54 40.18 0.26 12.94 14 10 N -0.49 -26.16 7.85 -189.09 -1.48 -27.64 14 11 C 0.14 6.30 11.16 84.90 0.95 7.25 14 12 C -0.16 -7.04 7.38 22.79 0.17 -6.87 14 13 F -0.15 -6.48 17.17 44.97 0.77 -5.71 14 14 C 0.19 8.08 6.74 22.73 0.15 8.23 14 15 O -0.49 -16.69 12.31 -91.46 -1.13 -17.82 14 16 C -0.36 -16.89 5.45 -19.21 -0.10 -16.99 14 17 C 0.34 13.63 4.91 71.23 0.35 13.98 14 18 F -0.21 -8.79 16.04 44.97 0.72 -8.06 14 19 F -0.22 -9.32 16.03 44.97 0.72 -8.60 14 20 H 0.29 12.95 8.29 -92.71 -0.77 12.18 14 21 H 0.16 6.48 8.06 -2.91 -0.02 6.46 14 22 H 0.41 9.29 9.06 -74.06 -0.67 8.62 14 23 H 0.14 4.40 7.09 -2.39 -0.02 4.38 14 Total: -1.00 -61.18 225.60 4.94 -56.23 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.62 Total: 11.17 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 2.44 Total: -1.47 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -1.23 Total: -64.07 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.13 Total: -17.82 kcal Atomic # 9 Polarization: -24.58 SS G_CDS: 2.21 Total: -22.37 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -61.18 4.94 -56.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724302.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.157 kcal (2) G-P(sol) polarization free energy of solvation -61.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds