Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30762 * 1 3 3 Si 1.86803 * 119.99545 * 2 1 4 4 H 1.48500 * 109.47258 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47117 * 120.00300 * 3 2 1 6 6 H 1.48502 * 109.47279 * 239.99623 * 3 2 1 7 7 C 1.40038 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00646 * 154.55793 * 7 2 1 9 9 C 1.41222 * 119.99761 * 334.56853 * 7 2 1 10 10 C 1.41166 * 121.05728 * 335.32850 * 9 7 2 11 11 C 1.36424 * 119.11213 * 179.74784 * 10 9 7 12 12 C 1.50707 * 119.30830 * 180.27350 * 11 10 9 13 13 F 1.39900 * 109.47453 * 210.26905 * 12 11 10 14 14 F 1.39901 * 109.46741 * 330.27481 * 12 11 10 15 15 N 1.32209 * 121.38901 * 0.55442 * 11 10 9 16 16 C 1.31954 * 122.37437 * 359.72042 * 15 11 10 17 17 F 1.35100 * 119.65338 * 180.02562 * 16 15 11 18 18 C 1.38977 * 120.68888 * 359.97438 * 16 15 11 19 19 O 1.35682 * 120.72931 * 180.02562 * 18 16 15 20 20 H 0.97003 * 119.99953 * 174.19892 * 1 2 3 21 21 H 1.08002 * 120.44682 * 0.02655 * 10 9 7 22 22 H 1.09005 * 109.46721 * 90.26682 * 12 11 10 23 23 H 0.96707 * 113.99791 * 271.86761 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0953 1.6965 1.2125 6 1 3.0953 1.6966 -1.2125 7 6 2.0079 -1.2127 0.0005 8 1 3.0094 -1.2582 -0.4012 9 6 1.4045 -2.3763 0.5263 10 6 0.3755 -2.2916 1.4889 11 6 -0.1832 -3.4410 1.9662 12 6 -1.2864 -3.3556 2.9893 13 9 -1.2434 -4.4828 3.8168 14 9 -1.1165 -2.2023 3.7629 15 7 0.2266 -4.6285 1.5541 16 6 1.1872 -4.7738 0.6612 17 9 1.5624 -6.0141 0.2789 18 6 1.8163 -3.6643 0.1092 19 8 2.8038 -3.8127 -0.8094 20 1 -0.4850 -0.8358 -0.0849 21 1 0.0319 -1.3296 1.8395 22 1 -2.2502 -3.3139 2.4818 23 1 3.6872 -3.9022 -0.4262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238724485.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -173.704181 kcal Electronic energy + Delta-G solvation = -16193.890732 eV Core-core repulsion = 12784.974512 eV Total energy + Delta-G solvation = -3408.916220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.47769 -48.06609 -46.48511 -39.04708 -36.25088 -34.80456 -30.52792 -30.24482 -26.19468 -25.40540 -22.13156 -21.46076 -18.68770 -17.57125 -17.10721 -16.93433 -16.72160 -15.81511 -15.35368 -15.23200 -14.34511 -14.07223 -13.58442 -13.29914 -12.94273 -12.82087 -12.67723 -12.26277 -11.91378 -11.80841 -11.40874 -10.96512 -10.62480 -10.34398 -10.20412 -9.55457 -8.60155 -8.52208 -7.99871 -7.65327 -5.08432 1.84615 2.27508 2.95809 3.03169 3.16810 3.70517 3.96142 4.07386 4.48251 4.69322 4.93990 5.19223 5.39991 5.41982 6.03368 6.26139 6.58656 6.71952 6.95785 7.20008 7.49121 7.55699 7.92594 8.23374 8.57321 8.73234 9.53398 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.011549 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.400432 B = 2423.973372 C = 3546.460586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.035 3.965 3 Si 1.072 2.928 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.460 4.460 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.228 4.228 11 C 0.082 3.918 12 C 0.330 3.670 13 F -0.196 7.196 14 F -0.199 7.199 15 N -0.583 5.583 16 C 0.306 3.694 17 F -0.131 7.131 18 C -0.086 4.086 19 O -0.474 6.474 20 H 0.303 0.697 21 H 0.132 0.868 22 H 0.119 0.881 23 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 0.894 1.969 2.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.190 4.190 3 Si 0.893 3.107 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.111 0.889 9 C 0.087 3.913 10 C -0.252 4.252 11 C -0.048 4.048 12 C 0.276 3.724 13 F -0.177 7.177 14 F -0.180 7.180 15 N -0.306 5.306 16 C 0.154 3.846 17 F -0.110 7.110 18 C -0.137 4.137 19 O -0.279 6.279 20 H 0.117 0.883 21 H 0.150 0.850 22 H 0.136 0.864 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.544 1.770 1.977 2.709 hybrid contribution 1.048 -1.424 -0.008 1.768 sum 0.504 0.346 1.969 2.062 Atomic orbital electron populations 1.70467 1.08318 1.34770 1.24645 1.27425 0.95582 1.05001 0.91040 0.83526 0.75740 0.72888 0.78548 1.19254 1.19428 1.19516 1.20657 1.03270 0.92993 1.31931 0.88925 1.17933 0.91286 0.92031 0.90054 1.21493 1.03092 0.98270 1.02324 1.20149 0.97573 0.89236 0.97874 1.20060 0.98843 0.70918 0.82609 1.92967 1.97812 1.52424 1.74542 1.92976 1.97090 1.50512 1.77450 1.66136 1.18992 1.27081 1.18405 1.18252 0.94319 0.78908 0.93149 1.91484 1.89537 1.40848 1.89166 1.19086 1.01203 0.90971 1.02442 1.84846 1.16511 1.94772 1.31724 0.88319 0.84989 0.86424 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.03 12.33 55.55 0.68 -17.34 14 2 C 0.04 0.80 4.99 -17.33 -0.09 0.71 14 3 Si 1.07 18.98 30.00 -169.99 -5.10 13.88 14 4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 14 5 H -0.27 -4.60 7.11 56.52 0.40 -4.20 14 6 H -0.27 -4.55 7.11 56.52 0.40 -4.15 14 7 C -0.46 -11.01 8.73 -37.77 -0.33 -11.34 14 8 H 0.09 2.14 7.78 -52.49 -0.41 1.73 14 9 C 0.10 2.35 5.34 -106.41 -0.57 1.78 14 10 C -0.23 -5.39 7.29 -39.13 -0.29 -5.68 14 11 C 0.08 1.86 6.54 -83.08 -0.54 1.32 14 12 C 0.33 6.25 5.71 36.01 0.21 6.45 14 13 F -0.20 -3.88 17.05 2.25 0.04 -3.84 14 14 F -0.20 -3.80 16.40 2.25 0.04 -3.77 14 15 N -0.58 -14.14 9.92 -10.06 -0.10 -14.24 14 16 C 0.31 7.44 8.43 -17.23 -0.15 7.29 14 17 F -0.13 -3.02 17.15 2.25 0.04 -2.98 14 18 C -0.09 -2.07 6.80 -38.06 -0.26 -2.33 14 19 O -0.47 -10.46 12.80 -18.75 -0.24 -10.70 14 20 H 0.30 7.37 6.66 -40.82 -0.27 7.10 14 21 H 0.13 3.11 6.02 -52.49 -0.32 2.80 14 22 H 0.12 1.80 8.14 -51.93 -0.42 1.38 14 23 H 0.36 6.17 9.06 45.56 0.41 6.59 14 LS Contribution 228.46 15.07 3.44 3.44 Total: -1.00 -27.43 228.46 -3.01 -30.44 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.20 Total: 6.91 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.01 Total: -1.80 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.59 Total: -31.58 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.24 Total: -10.70 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 0.11 Total: -10.59 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.10 Total: 13.88 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.43 -3.01 -30.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724485.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.264 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds