Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30762 * 1 3 3 Si 1.86803 * 119.99545 * 2 1 4 4 H 1.48500 * 109.47258 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47117 * 120.00300 * 3 2 1 6 6 H 1.48502 * 109.47279 * 239.99623 * 3 2 1 7 7 C 1.40038 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00646 * 154.55793 * 7 2 1 9 9 C 1.41222 * 119.99761 * 334.56853 * 7 2 1 10 10 C 1.41166 * 121.05728 * 335.32850 * 9 7 2 11 11 C 1.36424 * 119.11213 * 179.74784 * 10 9 7 12 12 C 1.50707 * 119.30830 * 180.27350 * 11 10 9 13 13 F 1.39900 * 109.47453 * 210.26905 * 12 11 10 14 14 F 1.39901 * 109.46741 * 330.27481 * 12 11 10 15 15 N 1.32209 * 121.38901 * 0.55442 * 11 10 9 16 16 C 1.31954 * 122.37437 * 359.72042 * 15 11 10 17 17 F 1.35100 * 119.65338 * 180.02562 * 16 15 11 18 18 C 1.38977 * 120.68888 * 359.97438 * 16 15 11 19 19 O 1.35682 * 120.72931 * 180.02562 * 18 16 15 20 20 H 0.97003 * 119.99953 * 174.19892 * 1 2 3 21 21 H 1.08002 * 120.44682 * 0.02655 * 10 9 7 22 22 H 1.09005 * 109.46721 * 90.26682 * 12 11 10 23 23 H 0.96707 * 113.99791 * 271.86761 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0953 1.6965 1.2125 6 1 3.0953 1.6966 -1.2125 7 6 2.0079 -1.2127 0.0005 8 1 3.0094 -1.2582 -0.4012 9 6 1.4045 -2.3763 0.5263 10 6 0.3755 -2.2916 1.4889 11 6 -0.1832 -3.4410 1.9662 12 6 -1.2864 -3.3556 2.9893 13 9 -1.2434 -4.4828 3.8168 14 9 -1.1165 -2.2023 3.7629 15 7 0.2266 -4.6285 1.5541 16 6 1.1872 -4.7738 0.6612 17 9 1.5624 -6.0141 0.2789 18 6 1.8163 -3.6643 0.1092 19 8 2.8038 -3.8127 -0.8094 20 1 -0.4850 -0.8358 -0.0849 21 1 0.0319 -1.3296 1.8395 22 1 -2.2502 -3.3139 2.4818 23 1 3.6872 -3.9022 -0.4262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238724485.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -192.215446 kcal Electronic energy + Delta-G solvation = -16194.693440 eV Core-core repulsion = 12784.974512 eV Total energy + Delta-G solvation = -3409.718928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.00575 -49.91407 -48.01605 -40.85961 -38.02701 -36.58800 -32.34653 -31.99089 -28.02258 -27.06024 -23.96658 -23.20484 -20.43582 -19.34412 -18.75799 -18.53321 -18.41243 -17.50048 -17.09543 -17.05994 -15.92058 -15.78990 -15.34815 -14.85715 -14.67198 -14.39250 -14.36725 -14.02911 -13.63331 -13.53186 -12.94842 -12.59763 -12.07244 -11.93794 -11.85727 -11.23527 -10.43687 -10.35446 -9.82303 -9.46145 -6.93880 0.03323 0.44201 1.52685 1.59681 1.82775 2.23652 2.28166 2.38162 2.88142 3.00787 3.23290 3.46596 3.75770 3.93973 4.23894 4.45647 4.81207 4.87062 5.13599 5.35912 5.66216 5.73718 6.11415 6.43560 6.84319 6.95727 7.71295 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.011549 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.400432 B = 2423.973372 C = 3546.460586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.007 3.993 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.254 1.254 7 C -0.476 4.476 8 H 0.097 0.903 9 C 0.071 3.929 10 C -0.237 4.237 11 C 0.077 3.923 12 C 0.334 3.666 13 F -0.201 7.201 14 F -0.200 7.200 15 N -0.596 5.596 16 C 0.291 3.709 17 F -0.128 7.128 18 C -0.093 4.093 19 O -0.481 6.481 20 H 0.291 0.709 21 H 0.130 0.870 22 H 0.163 0.837 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 1.782 2.066 2.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.215 4.215 3 Si 0.936 3.064 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.115 0.885 9 C 0.063 3.937 10 C -0.261 4.261 11 C -0.053 4.053 12 C 0.280 3.720 13 F -0.182 7.182 14 F -0.181 7.181 15 N -0.319 5.319 16 C 0.140 3.860 17 F -0.107 7.107 18 C -0.144 4.144 19 O -0.288 6.288 20 H 0.104 0.896 21 H 0.148 0.852 22 H 0.179 0.821 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.311 2.622 2.077 3.359 hybrid contribution 1.013 -1.747 -0.069 2.021 sum 0.702 0.875 2.008 2.300 Atomic orbital electron populations 1.70565 1.08976 1.34009 1.25776 1.28798 0.95548 1.07699 0.89450 0.82943 0.74879 0.68987 0.79593 1.19139 1.18266 1.17806 1.20936 1.03589 0.93596 1.32266 0.88521 1.18279 0.92029 0.92603 0.90768 1.21484 1.03478 0.98516 1.02613 1.20707 0.97962 0.88478 0.98182 1.20321 0.99200 0.70604 0.81886 1.92958 1.97827 1.52758 1.74637 1.92975 1.97145 1.50567 1.77435 1.66232 1.19222 1.27755 1.18717 1.18426 0.94782 0.79176 0.93644 1.91480 1.89533 1.40521 1.89167 1.19162 1.01884 0.90922 1.02459 1.84755 1.17551 1.94690 1.31828 0.89614 0.85244 0.82051 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.18 12.33 21.84 0.27 -35.91 14 2 C 0.01 0.29 4.99 85.29 0.43 0.71 14 3 Si 1.12 36.42 30.00 68.60 2.06 38.48 14 4 H -0.27 -8.60 7.11 99.48 0.71 -7.89 14 5 H -0.26 -7.92 7.11 99.48 0.71 -7.21 14 6 H -0.25 -7.58 7.11 99.48 0.71 -6.87 14 7 C -0.48 -22.48 8.73 23.44 0.20 -22.28 14 8 H 0.10 4.37 7.78 -2.91 -0.02 4.35 14 9 C 0.07 3.51 5.34 -21.02 -0.11 3.40 14 10 C -0.24 -11.16 7.29 22.57 0.16 -10.99 14 11 C 0.08 3.45 6.54 42.08 0.28 3.72 14 12 C 0.33 12.03 5.71 71.24 0.41 12.44 14 13 F -0.20 -7.60 17.05 44.97 0.77 -6.83 14 14 F -0.20 -7.33 16.40 44.97 0.74 -6.59 14 15 N -0.60 -28.54 9.92 -185.73 -1.84 -30.39 14 16 C 0.29 14.08 8.43 84.85 0.72 14.80 14 17 F -0.13 -5.83 17.15 44.97 0.77 -5.06 14 18 C -0.09 -4.47 6.80 23.25 0.16 -4.31 14 19 O -0.48 -20.86 12.80 -90.00 -1.15 -22.02 14 20 H 0.29 14.20 6.66 -92.71 -0.62 13.58 14 21 H 0.13 6.08 6.02 -2.91 -0.02 6.06 14 22 H 0.16 4.47 8.14 -2.38 -0.02 4.45 14 23 H 0.38 12.71 9.06 -74.05 -0.67 12.04 14 Total: -1.00 -56.94 228.46 4.62 -52.32 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.77 Total: 18.51 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 2.24 Total: -2.51 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -1.57 Total: -66.29 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.15 Total: -22.02 kcal Atomic # 9 Polarization: -20.76 SS G_CDS: 2.28 Total: -18.48 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.06 Total: 38.48 kcal Total: -56.94 4.62 -52.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724485.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.897 kcal (2) G-P(sol) polarization free energy of solvation -56.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds