Wall clock time and date at job start Mon Mar 30 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86795 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47273 * 240.27272 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27485 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27469 * 3 2 1 7 7 C 1.40005 * 119.99766 * 180.27491 * 2 1 3 8 8 H 1.07999 * 120.00015 * 179.72736 * 7 2 1 9 9 C 1.41117 * 119.99727 * 359.72539 * 7 2 1 10 10 C 1.40740 * 119.73005 * 179.72818 * 9 7 2 11 11 C 1.36952 * 119.24706 * 179.72363 * 10 9 7 12 12 C 1.50695 * 120.64630 * 180.23629 * 11 10 9 13 13 F 1.39900 * 109.47704 * 300.30916 * 12 11 10 14 14 F 1.39899 * 109.46974 * 60.31064 * 12 11 10 15 15 C 1.39447 * 118.70321 * 0.53879 * 11 10 9 16 16 O 1.35696 * 120.29652 * 179.69963 * 15 11 10 17 17 C 1.39896 * 119.40560 * 359.72557 * 15 11 10 18 18 F 1.35105 * 119.64174 * 180.02562 * 17 15 11 19 19 N 1.31488 * 120.71141 * 359.97438 * 17 15 11 20 20 H 0.97000 * 119.99388 * 359.72744 * 1 2 3 21 21 H 1.07993 * 120.37489 * 359.97438 * 10 9 7 22 22 H 1.08998 * 109.47519 * 180.30600 * 12 11 10 23 23 H 0.96702 * 114.00287 * 270.02547 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0906 1.6992 -1.2158 5 1 1.2770 2.7464 0.0067 6 1 3.1007 1.6934 1.2092 7 6 2.0078 -1.2125 -0.0058 8 1 3.0878 -1.2125 -0.0103 9 6 1.3021 -2.4345 -0.0058 10 6 2.0114 -3.6501 -0.0175 11 6 1.3167 -4.8303 -0.0116 12 6 2.0442 -6.1500 -0.0184 13 9 2.8421 -6.2368 -1.1642 14 9 2.8515 -6.2432 1.1203 15 6 -0.0771 -4.7869 -0.0057 16 8 -0.7978 -5.9367 -0.0059 17 6 -0.7258 -3.5474 -0.0001 18 9 -2.0759 -3.4998 0.0062 19 7 -0.0355 -2.4283 0.0002 20 1 -0.4849 0.8401 0.0040 21 1 3.0913 -3.6521 -0.0268 22 1 1.3197 -6.9643 -0.0177 23 1 -1.0101 -6.2677 -0.8894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238724529.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:24 Heat of formation + Delta-G solvation = -160.242156 kcal Electronic energy + Delta-G solvation = -16102.510875 eV Core-core repulsion = 12694.178413 eV Total energy + Delta-G solvation = -3408.332462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.51196 -47.81303 -46.50527 -38.78561 -36.39408 -33.73958 -31.67666 -29.62688 -25.91292 -25.64096 -21.87045 -21.32641 -18.15108 -17.71278 -17.31009 -16.73529 -16.56770 -15.43721 -15.13236 -15.03769 -14.75937 -14.05464 -13.45094 -13.27301 -12.93611 -12.90524 -12.18988 -12.01913 -11.88283 -11.65010 -11.23128 -10.98291 -10.83917 -10.38276 -10.30884 -9.59257 -8.72934 -8.09397 -7.76156 -6.78838 -4.91734 2.13614 2.31099 2.92931 2.95134 2.95286 3.70367 4.20271 4.27290 4.63046 4.88003 5.19132 5.22880 5.33492 5.62301 6.12527 6.23443 6.74405 6.83200 6.91155 6.98923 7.43591 7.75774 8.12899 8.31599 8.54024 9.45831 9.91889 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.009361 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.189671 B = 2990.473474 C = 3809.604426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.059 3.941 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.395 4.395 8 H 0.097 0.903 9 C 0.264 3.736 10 C -0.221 4.221 11 C -0.100 4.100 12 C 0.317 3.683 13 F -0.206 7.206 14 F -0.203 7.203 15 C -0.123 4.123 16 O -0.485 6.485 17 C 0.325 3.675 18 F -0.131 7.131 19 N -0.498 5.498 20 H 0.283 0.717 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -4.126 -1.524 4.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.170 4.170 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.425 4.425 8 H 0.115 0.885 9 C 0.141 3.859 10 C -0.244 4.244 11 C -0.106 4.106 12 C 0.263 3.737 13 F -0.188 7.188 14 F -0.185 7.185 15 C -0.174 4.174 16 O -0.290 6.290 17 C 0.161 3.839 18 F -0.111 7.111 19 N -0.218 5.218 20 H 0.094 0.906 21 H 0.135 0.865 22 H 0.134 0.866 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.543 -3.139 -0.894 3.611 hybrid contribution 0.509 -0.138 -0.540 0.755 sum 2.053 -3.278 -1.434 4.125 Atomic orbital electron populations 1.70117 1.07488 1.29151 1.24630 1.26246 0.95116 1.01861 0.93747 0.86169 0.80013 0.79294 0.80315 1.18487 1.19838 1.18476 1.19793 0.94956 0.89019 1.38753 0.88470 1.18172 0.86067 0.92147 0.89507 1.21372 0.99770 0.91872 1.11391 1.19924 0.92918 0.94133 1.03651 1.20214 0.84303 0.98339 0.70828 1.92963 1.76970 1.97459 1.51369 1.92964 1.76260 1.97398 1.51847 1.18077 0.88458 0.84748 1.26166 1.84902 1.73630 1.38841 1.31655 1.18919 0.78212 0.89988 0.96765 1.91481 1.28890 1.97182 1.93511 1.68244 1.08496 1.24459 1.20648 0.90595 0.86491 0.86574 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.52 11.45 55.55 0.64 -16.89 14 2 C 0.06 1.38 5.50 -17.34 -0.10 1.29 14 3 Si 0.92 17.08 29.56 -169.99 -5.02 12.05 14 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 14 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 14 7 C -0.40 -9.73 9.12 -37.83 -0.35 -10.08 14 8 H 0.10 2.16 7.85 -52.49 -0.41 1.75 14 9 C 0.26 6.84 6.55 -84.99 -0.56 6.29 14 10 C -0.22 -5.16 9.36 -39.10 -0.37 -5.53 14 11 C -0.10 -2.18 5.37 -104.64 -0.56 -2.74 14 12 C 0.32 5.76 5.45 36.00 0.20 5.96 14 13 F -0.21 -3.75 17.26 2.25 0.04 -3.71 14 14 F -0.20 -3.86 17.27 2.25 0.04 -3.82 14 15 C -0.12 -2.78 6.75 -38.51 -0.26 -3.04 14 16 O -0.49 -9.29 12.24 -18.79 -0.23 -9.52 14 17 C 0.32 8.18 8.44 -17.08 -0.14 8.03 14 18 F -0.13 -3.19 17.14 2.25 0.04 -3.15 14 19 N -0.50 -13.51 7.86 -11.29 -0.09 -13.60 14 20 H 0.28 6.41 8.29 -40.82 -0.34 6.07 14 21 H 0.12 2.53 8.06 -52.49 -0.42 2.11 14 22 H 0.12 1.79 7.09 -51.93 -0.37 1.42 14 23 H 0.36 5.10 9.06 45.56 0.41 5.51 14 LS Contribution 230.99 15.07 3.48 3.48 Total: -1.00 -28.24 230.99 -3.17 -31.41 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 0.08 Total: 3.57 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.13 Total: 0.18 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.55 Total: -30.49 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.23 Total: -9.52 kcal Atomic # 9 Polarization: -10.80 SS G_CDS: 0.12 Total: -10.68 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.02 Total: 12.05 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.24 -3.17 -31.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724529.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.831 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds