Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46947 * 269.99663 * 3 2 1 5 5 H 1.48508 * 109.47332 * 29.99556 * 3 2 1 6 6 H 1.48494 * 109.47365 * 149.99796 * 3 2 1 7 7 C 1.40043 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99317 * 161.35160 * 7 2 1 9 9 C 1.41224 * 120.00440 * 341.34960 * 7 2 1 10 10 C 1.41535 * 121.05434 * 320.05159 * 9 7 2 11 11 O 1.35682 * 120.72725 * 0.04537 * 10 9 7 12 12 C 1.38941 * 118.54616 * 179.97438 * 10 9 7 13 13 F 1.35099 * 119.65324 * 180.02562 * 12 10 9 14 14 N 1.31981 * 120.68955 * 0.04543 * 12 10 9 15 15 C 1.32174 * 122.37928 * 359.97438 * 14 12 10 16 16 C 1.36458 * 121.38290 * 359.97438 * 15 14 12 17 17 C 1.50700 * 120.44115 * 179.72851 * 16 15 14 18 18 F 1.39903 * 109.47226 * 22.54807 * 17 16 15 19 19 F 1.39904 * 109.47014 * 142.55096 * 17 16 15 20 20 H 0.96995 * 120.00244 * 0.02562 * 1 2 3 21 21 H 0.96702 * 113.99883 * 274.70586 * 11 10 9 22 22 H 1.07998 * 119.30592 * 179.97438 * 15 14 12 23 23 H 1.08997 * 109.47600 * 262.55055 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0463 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4402 0.7000 7 6 2.0079 -1.2129 0.0005 8 1 3.0454 -1.2375 -0.2986 9 6 1.3574 -2.4036 0.3922 10 6 0.4528 -2.4174 1.4807 11 8 0.1874 -1.2828 2.1759 12 6 -0.1584 -3.6178 1.8208 13 9 -1.0261 -3.6564 2.8557 14 7 0.1000 -4.7209 1.1438 15 6 0.9389 -4.7446 0.1228 16 6 1.5885 -3.6176 -0.2895 17 6 2.5453 -3.6700 -1.4526 18 9 2.2433 -4.7753 -2.2555 19 9 2.4261 -2.4984 -2.2078 20 1 -0.4850 0.8400 -0.0004 21 1 0.8196 -1.0984 2.8839 22 1 1.1141 -5.6755 -0.3961 23 1 3.5657 -3.7597 -1.0800 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238724623.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = -160.042851 kcal Electronic energy + Delta-G solvation = -16548.357421 eV Core-core repulsion = 13140.033601 eV Total energy + Delta-G solvation = -3408.323820 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.09512 -47.89082 -46.07869 -38.79484 -35.99020 -33.93714 -31.54222 -29.25510 -26.40191 -24.94121 -22.06111 -21.01156 -18.17703 -17.31604 -16.87317 -16.56123 -16.13990 -15.55678 -15.32571 -15.11344 -14.81059 -13.49316 -13.11178 -12.97361 -12.84121 -12.53726 -12.40294 -12.02525 -11.86390 -11.50970 -11.24801 -11.04510 -10.54157 -10.40133 -9.97587 -9.39500 -8.42522 -8.15648 -7.61100 -7.05439 -4.85464 2.04812 2.46597 2.97243 2.98591 3.01780 3.76454 4.31819 4.61373 4.72912 4.93320 5.29025 5.39667 5.75455 5.80473 5.87410 6.34528 6.77296 6.81031 6.94896 7.26513 7.60413 7.93768 8.20143 8.44713 8.83705 8.96213 9.93388 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.015043 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.667683 B = 1860.857613 C = 3063.985985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.437 4.437 8 H 0.092 0.908 9 C 0.147 3.853 10 C -0.026 4.026 11 O -0.455 6.455 12 C 0.285 3.715 13 F -0.134 7.134 14 N -0.593 5.593 15 C 0.167 3.833 16 C -0.323 4.323 17 C 0.340 3.660 18 F -0.218 7.218 19 F -0.192 7.192 20 H 0.289 0.711 21 H 0.354 0.646 22 H 0.142 0.858 23 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -0.364 0.247 5.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.110 0.890 9 C 0.138 3.862 10 C -0.077 4.077 11 O -0.259 6.259 12 C 0.137 3.863 13 F -0.114 7.114 14 N -0.314 5.314 15 C 0.013 3.987 16 C -0.330 4.330 17 C 0.285 3.715 18 F -0.199 7.199 19 F -0.173 7.173 20 H 0.100 0.900 21 H 0.205 0.795 22 H 0.159 0.841 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.061 -0.909 0.137 4.164 hybrid contribution 0.777 1.492 0.141 1.688 sum 4.838 0.583 0.278 4.881 Atomic orbital electron populations 1.69685 1.07962 1.30452 1.27025 1.25847 0.94616 1.01235 0.92441 0.86251 0.80528 0.80229 0.79514 1.19218 1.19832 1.18235 1.19425 0.98669 0.90735 1.37698 0.89045 1.17582 0.88248 0.91860 0.88477 1.19044 1.06612 0.84652 0.97394 1.84959 1.52529 1.40084 1.48345 1.18606 0.90864 0.90281 0.86586 1.91467 1.67426 1.97057 1.55425 1.66779 1.23323 1.28535 1.12778 1.21152 0.89933 0.96737 0.90891 1.20829 1.11614 0.97472 1.03081 1.19760 0.98536 0.70692 0.82462 1.92891 1.95344 1.55059 1.76639 1.93000 1.97461 1.48881 1.78002 0.90019 0.79464 0.84076 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.26 11.30 55.55 0.63 -17.63 14 2 C 0.08 1.97 4.53 -17.33 -0.08 1.89 14 3 Si 0.91 17.29 29.60 -169.99 -5.03 12.25 14 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 7 C -0.44 -10.36 6.87 -37.77 -0.26 -10.62 14 8 H 0.09 2.04 7.35 -52.48 -0.39 1.66 14 9 C 0.15 3.58 5.34 -106.41 -0.57 3.01 14 10 C -0.03 -0.64 6.25 -38.07 -0.24 -0.88 14 11 O -0.46 -10.63 10.53 -18.75 -0.20 -10.83 14 12 C 0.28 7.04 8.43 -17.23 -0.15 6.89 14 13 F -0.13 -3.21 17.15 2.25 0.04 -3.17 14 14 N -0.59 -14.27 10.34 -13.86 -0.14 -14.41 14 15 C 0.17 3.66 10.49 -18.05 -0.19 3.47 14 16 C -0.32 -7.24 5.76 -104.17 -0.60 -7.84 14 17 C 0.34 6.58 5.30 36.01 0.19 6.77 14 18 F -0.22 -4.08 16.27 2.25 0.04 -4.04 14 19 F -0.19 -4.18 15.00 2.25 0.03 -4.14 14 20 H 0.29 6.62 8.29 -40.82 -0.34 6.28 14 21 H 0.35 6.65 9.06 45.56 0.41 7.06 14 22 H 0.14 2.67 7.38 -52.49 -0.39 2.28 14 23 H 0.10 1.54 8.14 -51.93 -0.42 1.12 14 LS Contribution 224.71 15.07 3.39 3.39 Total: -1.00 -28.23 224.71 -3.05 -31.28 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.08 Total: 4.61 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.89 Total: 2.70 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.48 Total: -32.04 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.20 Total: -10.83 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 0.11 Total: -11.36 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.23 -3.05 -31.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724623.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.762 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds