Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46947 * 269.99663 * 3 2 1 5 5 H 1.48508 * 109.47332 * 29.99556 * 3 2 1 6 6 H 1.48494 * 109.47365 * 149.99796 * 3 2 1 7 7 C 1.40043 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99317 * 161.35160 * 7 2 1 9 9 C 1.41224 * 120.00440 * 341.34960 * 7 2 1 10 10 C 1.41535 * 121.05434 * 320.05159 * 9 7 2 11 11 O 1.35682 * 120.72725 * 0.04537 * 10 9 7 12 12 C 1.38941 * 118.54616 * 179.97438 * 10 9 7 13 13 F 1.35099 * 119.65324 * 180.02562 * 12 10 9 14 14 N 1.31981 * 120.68955 * 0.04543 * 12 10 9 15 15 C 1.32174 * 122.37928 * 359.97438 * 14 12 10 16 16 C 1.36458 * 121.38290 * 359.97438 * 15 14 12 17 17 C 1.50700 * 120.44115 * 179.72851 * 16 15 14 18 18 F 1.39903 * 109.47226 * 22.54807 * 17 16 15 19 19 F 1.39904 * 109.47014 * 142.55096 * 17 16 15 20 20 H 0.96995 * 120.00244 * 0.02562 * 1 2 3 21 21 H 0.96702 * 113.99883 * 274.70586 * 11 10 9 22 22 H 1.07998 * 119.30592 * 179.97438 * 15 14 12 23 23 H 1.08997 * 109.47600 * 262.55055 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0463 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4402 0.7000 7 6 2.0079 -1.2129 0.0005 8 1 3.0454 -1.2375 -0.2986 9 6 1.3574 -2.4036 0.3922 10 6 0.4528 -2.4174 1.4807 11 8 0.1874 -1.2828 2.1759 12 6 -0.1584 -3.6178 1.8208 13 9 -1.0261 -3.6564 2.8557 14 7 0.1000 -4.7209 1.1438 15 6 0.9389 -4.7446 0.1228 16 6 1.5885 -3.6176 -0.2895 17 6 2.5453 -3.6700 -1.4526 18 9 2.2433 -4.7753 -2.2555 19 9 2.4261 -2.4984 -2.2078 20 1 -0.4850 0.8400 -0.0004 21 1 0.8196 -1.0984 2.8839 22 1 1.1141 -5.6755 -0.3961 23 1 3.5657 -3.7597 -1.0800 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238724623.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = -179.401836 kcal Electronic energy + Delta-G solvation = -16549.196889 eV Core-core repulsion = 13140.033601 eV Total energy + Delta-G solvation = -3409.163288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.76492 -49.64385 -47.65132 -40.58268 -37.79070 -35.71386 -33.31001 -31.03453 -28.19633 -26.60063 -23.85679 -22.76094 -19.96806 -19.08770 -18.57509 -18.12808 -17.88134 -17.25761 -17.04620 -16.82389 -16.56862 -15.25137 -14.84553 -14.70801 -14.47246 -14.21400 -13.99803 -13.71373 -13.58416 -13.18227 -12.86131 -12.71583 -12.09177 -11.97620 -11.76969 -11.11437 -10.22298 -9.95765 -9.42772 -8.79797 -6.67138 0.24503 0.68181 1.43517 1.49791 1.57531 2.18857 2.56228 2.89387 3.10115 3.26928 3.64719 3.70255 4.08345 4.16818 4.34245 4.60169 4.99836 5.05645 5.21256 5.48938 5.83308 6.15241 6.43931 6.65942 7.07792 7.21234 8.21408 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.015043 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.667683 B = 1860.857613 C = 3063.985985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.049 3.951 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.448 4.448 8 H 0.103 0.897 9 C 0.123 3.877 10 C -0.037 4.037 11 O -0.467 6.467 12 C 0.264 3.736 13 F -0.137 7.137 14 N -0.607 5.607 15 C 0.163 3.837 16 C -0.330 4.330 17 C 0.341 3.659 18 F -0.214 7.214 19 F -0.207 7.207 20 H 0.293 0.707 21 H 0.371 0.629 22 H 0.172 0.828 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.734 0.033 -0.196 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.174 4.174 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.476 4.476 8 H 0.121 0.879 9 C 0.114 3.886 10 C -0.089 4.089 11 O -0.272 6.272 12 C 0.116 3.884 13 F -0.116 7.116 14 N -0.329 5.329 15 C 0.010 3.990 16 C -0.337 4.337 17 C 0.287 3.713 18 F -0.195 7.195 19 F -0.189 7.189 20 H 0.104 0.896 21 H 0.225 0.775 22 H 0.189 0.811 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.532 -0.533 -0.302 5.566 hybrid contribution 0.302 1.317 0.270 1.378 sum 5.834 0.784 -0.032 5.887 Atomic orbital electron populations 1.69759 1.09723 1.31571 1.28434 1.26709 0.95061 1.04426 0.91214 0.85182 0.79440 0.75681 0.79410 1.19149 1.19722 1.16965 1.19719 0.99159 0.91031 1.37698 0.87891 1.17946 0.88652 0.93155 0.88822 1.19233 1.06950 0.84781 0.97919 1.84887 1.53526 1.39815 1.49015 1.18816 0.91524 0.90838 0.87171 1.91447 1.67530 1.97104 1.55516 1.66817 1.24138 1.28396 1.13545 1.21635 0.89103 0.97979 0.90312 1.21187 1.11856 0.96859 1.03758 1.20039 0.99756 0.70190 0.81279 1.92898 1.95481 1.54677 1.76442 1.92968 1.97597 1.49975 1.78318 0.89646 0.77496 0.81077 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -38.50 11.30 21.84 0.25 -38.26 14 2 C 0.05 2.20 4.53 85.29 0.39 2.59 14 3 Si 0.98 34.25 29.60 68.60 2.03 36.28 14 4 H -0.27 -9.23 7.11 99.48 0.71 -8.52 14 5 H -0.27 -9.37 7.11 99.48 0.71 -8.66 14 6 H -0.25 -8.05 7.11 99.48 0.71 -7.34 14 7 C -0.45 -20.67 6.87 23.44 0.16 -20.50 14 8 H 0.10 4.39 7.35 -2.91 -0.02 4.37 14 9 C 0.12 5.90 5.34 -21.02 -0.11 5.79 14 10 C -0.04 -1.85 6.25 23.25 0.15 -1.71 14 11 O -0.47 -21.83 10.53 -90.00 -0.95 -22.78 14 12 C 0.26 13.12 8.43 84.84 0.72 13.83 14 13 F -0.14 -6.58 17.15 44.97 0.77 -5.81 14 14 N -0.61 -28.91 10.34 -197.76 -2.04 -30.95 14 15 C 0.16 6.91 10.49 84.23 0.88 7.80 14 16 C -0.33 -14.29 5.76 -19.57 -0.11 -14.41 14 17 C 0.34 12.32 5.30 71.24 0.38 12.69 14 18 F -0.21 -7.42 16.27 44.97 0.73 -6.68 14 19 F -0.21 -8.61 15.00 44.97 0.67 -7.93 14 20 H 0.29 13.41 8.29 -92.71 -0.77 12.64 14 21 H 0.37 13.92 9.06 -74.06 -0.67 13.25 14 22 H 0.17 6.06 7.38 -2.91 -0.02 6.04 14 23 H 0.14 3.94 8.14 -2.39 -0.02 3.92 14 Total: -1.00 -58.88 224.71 4.53 -54.35 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.62 Total: 15.70 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 2.44 Total: 6.08 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -1.80 Total: -69.21 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.95 Total: -22.78 kcal Atomic # 9 Polarization: -22.60 SS G_CDS: 2.18 Total: -20.42 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 2.03 Total: 36.28 kcal Total: -58.88 4.53 -54.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724623.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.052 kcal (2) G-P(sol) polarization free energy of solvation -58.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds