Wall clock time and date at job start Mon Mar 30 2020 03:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86793 * 120.00055 * 2 1 4 4 H 1.48500 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47280 * 299.99888 * 3 2 1 6 6 H 1.48502 * 109.47486 * 59.99987 * 3 2 1 7 7 C 1.39907 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99582 * 168.45150 * 7 2 1 9 9 C 1.41344 * 120.00542 * 348.44572 * 7 2 1 10 10 C 1.40748 * 120.60142 * 328.83860 * 9 7 2 11 11 N 1.31502 * 120.54397 * 179.97438 * 10 9 7 12 12 C 1.32227 * 121.99165 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.41205 * 179.97438 * 12 11 10 14 14 C 1.39510 * 121.17120 * 359.97438 * 12 11 10 15 15 O 1.35957 * 120.34697 * 180.02562 * 14 12 11 16 16 C 1.38281 * 119.30607 * 0.02562 * 14 12 11 17 17 C 1.50693 * 120.90448 * 179.97438 * 16 14 12 18 18 F 1.39895 * 109.47064 * 22.99303 * 17 16 14 19 19 F 1.39898 * 109.47213 * 142.99176 * 17 16 14 20 20 H 0.96993 * 119.99810 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.73253 * 359.97438 * 10 9 7 22 22 H 0.96691 * 114.00121 * 89.99045 * 15 14 12 23 23 H 1.09000 * 109.47464 * 262.99099 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0718 -1.2211 -0.1878 9 6 1.3229 -2.4235 0.2441 10 6 0.1956 -2.4517 1.0864 11 7 -0.4414 -3.5797 1.3128 12 6 -0.0586 -4.7220 0.7677 13 9 -0.7512 -5.8504 1.0366 14 6 1.0477 -4.7826 -0.0801 15 8 1.4262 -5.9661 -0.6319 16 6 1.7552 -3.6263 -0.3533 17 6 2.9560 -3.6506 -1.2635 18 9 2.8776 -4.7620 -2.1095 19 9 2.9831 -2.4813 -2.0310 20 1 -0.4849 0.8400 -0.0004 21 1 -0.1492 -1.5396 1.5506 22 1 1.0122 -6.1523 -1.4856 23 1 3.8647 -3.7132 -0.6646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238724690.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:40 Heat of formation + Delta-G solvation = -184.488546 kcal Electronic energy + Delta-G solvation = -16485.435673 eV Core-core repulsion = 13076.051808 eV Total energy + Delta-G solvation = -3409.383865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.72965 -49.49642 -47.73660 -40.64972 -38.16144 -35.94952 -33.53712 -30.86220 -28.07208 -26.88167 -23.81332 -22.96407 -20.12338 -18.98317 -18.84977 -18.29481 -18.17794 -17.24404 -16.92250 -16.68569 -16.34265 -15.65039 -15.00577 -14.73473 -14.44419 -14.15192 -14.04631 -13.84696 -13.58517 -13.06190 -12.94635 -12.80699 -12.22529 -12.07298 -11.92131 -11.31283 -10.44382 -10.18593 -9.49409 -8.90823 -6.64470 0.27577 0.40467 1.44165 1.49450 1.60811 2.16580 2.46960 2.89549 3.10082 3.13475 3.37341 3.60902 3.86173 4.22323 4.38056 4.70111 4.91864 4.95626 5.13657 5.46991 5.71892 6.13689 6.29537 6.54551 6.72935 7.21068 8.08670 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028259 B = 0.011413 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.586460 B = 2452.698998 C = 3327.411130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.036 3.964 3 Si 0.994 3.006 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.427 4.427 8 H 0.105 0.895 9 C 0.070 3.930 10 C 0.068 3.932 11 N -0.494 5.494 12 C 0.088 3.912 13 F -0.143 7.143 14 C 0.118 3.882 15 O -0.488 6.488 16 C -0.283 4.283 17 C 0.344 3.656 18 F -0.207 7.207 19 F -0.201 7.201 20 H 0.302 0.698 21 H 0.160 0.840 22 H 0.402 0.598 23 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.434 0.839 -2.310 5.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.455 4.455 8 H 0.123 0.877 9 C 0.064 3.936 10 C -0.100 4.100 11 N -0.208 5.208 12 C -0.059 4.059 13 F -0.122 7.122 14 C 0.069 3.931 15 O -0.299 6.299 16 C -0.291 4.291 17 C 0.291 3.709 18 F -0.188 7.188 19 F -0.182 7.182 20 H 0.114 0.886 21 H 0.177 0.823 22 H 0.261 0.739 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.818 0.748 -1.354 5.060 hybrid contribution -0.021 0.257 -0.974 1.007 sum 4.797 1.005 -2.327 5.425 Atomic orbital electron populations 1.69769 1.09300 1.32355 1.31373 1.26973 0.95596 1.05141 0.90604 0.84940 0.79660 0.74945 0.79118 1.17212 1.19269 1.18403 1.20073 0.97408 0.89932 1.38090 0.87695 1.18464 0.92746 0.92733 0.89685 1.22790 0.95947 0.92711 0.98548 1.66467 1.31904 0.98867 1.23582 1.18100 0.96028 0.82691 1.09111 1.91393 1.79508 1.47488 1.93848 1.18403 0.92496 0.85885 0.96287 1.84694 1.70217 1.34363 1.40590 1.20996 1.05537 0.94039 1.08505 1.19835 0.98141 0.70346 0.82567 1.92885 1.97707 1.54059 1.74146 1.92970 1.97676 1.49622 1.77941 0.88633 0.82340 0.73933 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.46 11.08 21.82 0.24 -36.22 14 2 C 0.04 1.53 5.23 85.24 0.45 1.97 14 3 Si 0.99 32.11 29.57 68.60 2.03 34.14 14 4 H -0.25 -7.75 7.11 99.48 0.71 -7.04 14 5 H -0.27 -8.57 7.11 99.48 0.71 -7.86 14 6 H -0.26 -8.04 7.11 99.48 0.71 -7.33 14 7 C -0.43 -19.24 7.32 23.44 0.17 -19.07 14 8 H 0.11 4.40 6.79 -2.91 -0.02 4.38 14 9 C 0.07 3.35 5.50 -21.20 -0.12 3.24 14 10 C 0.07 3.41 9.83 85.36 0.84 4.25 14 11 N -0.49 -25.55 10.34 -194.18 -2.01 -27.56 14 12 C 0.09 4.37 8.43 84.94 0.72 5.09 14 13 F -0.14 -6.80 17.13 44.97 0.77 -6.03 14 14 C 0.12 5.32 6.65 22.59 0.15 5.47 14 15 O -0.49 -18.83 11.38 -93.07 -1.06 -19.89 14 16 C -0.28 -12.67 5.81 -19.16 -0.11 -12.78 14 17 C 0.34 12.97 5.24 71.23 0.37 13.34 14 18 F -0.21 -7.46 14.97 44.97 0.67 -6.79 14 19 F -0.20 -8.09 14.78 44.97 0.66 -7.43 14 20 H 0.30 12.19 8.30 -92.71 -0.77 11.42 14 21 H 0.16 7.94 6.45 -2.91 -0.02 7.92 14 22 H 0.40 12.25 8.77 -74.06 -0.65 11.60 14 23 H 0.14 4.19 8.14 -2.39 -0.02 4.18 14 Total: -1.00 -55.43 223.03 4.42 -51.01 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.64 Total: 17.26 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 2.47 Total: 1.51 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -1.77 Total: -63.78 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.06 Total: -19.89 kcal Atomic # 9 Polarization: -22.36 SS G_CDS: 2.11 Total: -20.25 kcal Atomic # 14 Polarization: 32.11 SS G_CDS: 2.03 Total: 34.14 kcal Total: -55.43 4.42 -51.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724690.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.483 kcal (2) G-P(sol) polarization free energy of solvation -55.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds