Wall clock time and date at job start Mon Mar 30 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86792 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47529 * 270.00356 * 3 2 1 5 5 H 1.48505 * 109.47072 * 30.00209 * 3 2 1 6 6 H 1.48501 * 109.47484 * 150.00028 * 3 2 1 7 7 C 1.39929 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99548 * 199.46696 * 7 2 1 9 9 C 1.41346 * 120.00430 * 19.46041 * 7 2 1 10 10 C 1.41268 * 120.65591 * 35.92856 * 9 7 2 11 11 F 1.35108 * 120.94924 * 359.94981 * 10 9 7 12 12 C 1.38840 * 118.10317 * 179.97438 * 10 9 7 13 13 O 1.35982 * 120.35878 * 180.02562 * 12 10 9 14 14 C 1.38875 * 119.28587 * 359.97432 * 12 10 9 15 15 N 1.32118 * 121.28586 * 0.02562 * 14 12 10 16 16 C 1.31464 * 122.10775 * 359.97438 * 15 14 12 17 17 C 1.50696 * 119.73152 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.47354 * 120.00296 * 17 16 15 19 19 F 1.39899 * 109.47285 * 240.00317 * 17 16 15 20 20 H 0.97004 * 119.99804 * 359.97438 * 1 2 3 21 21 H 0.96698 * 113.99964 * 89.99251 * 13 12 10 22 22 H 1.07996 * 119.35584 * 180.02562 * 14 12 10 23 23 H 1.09003 * 109.47493 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0464 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5401 1.4401 0.7000 7 6 2.0081 -1.2119 -0.0005 8 1 3.0418 -1.2387 0.3112 9 6 1.3619 -2.4008 -0.4089 10 6 0.4105 -2.3815 -1.4530 11 9 0.0950 -1.2294 -2.0843 12 6 -0.1915 -3.5801 -1.8115 13 8 -1.1133 -3.6144 -2.8106 14 6 0.1586 -4.7439 -1.1394 15 7 1.0522 -4.7318 -0.1663 16 6 1.6543 -3.6274 0.2158 17 6 2.6658 -3.6754 1.3318 18 9 3.9044 -3.2297 0.8581 19 9 2.2433 -2.8508 2.3799 20 1 -0.4850 0.8401 0.0004 21 1 -0.7372 -3.7712 -3.6875 22 1 -0.3087 -5.6769 -1.4176 23 1 2.7620 -4.6999 1.6913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238729412.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:13 Heat of formation + Delta-G solvation = -164.026244 kcal Electronic energy + Delta-G solvation = -16622.328858 eV Core-core repulsion = 13213.832305 eV Total energy + Delta-G solvation = -3408.496553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.00731 -47.33779 -45.98402 -38.79573 -36.47922 -34.11997 -30.76077 -29.94103 -26.48623 -24.76690 -22.12318 -21.10791 -18.19060 -17.36439 -16.88771 -16.65162 -16.26372 -15.50570 -15.23852 -14.71701 -14.37451 -13.70416 -13.21225 -13.03655 -12.96864 -12.39372 -12.12422 -12.05285 -11.85315 -11.56236 -11.41211 -11.06465 -10.73635 -10.53927 -9.64874 -9.53325 -8.54050 -7.98519 -7.92551 -7.13303 -4.82019 1.96875 2.44295 2.96508 3.01194 3.02806 3.76534 4.25552 4.55640 4.75516 5.00651 5.13964 5.40949 5.69159 6.00050 6.08729 6.37262 6.70392 6.81254 6.97312 7.17287 7.36552 7.90048 8.17252 8.34104 8.42789 9.06149 9.84102 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.015657 C = 0.009805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.433421 B = 1787.927256 C = 2854.933725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.431 4.431 8 H 0.103 0.897 9 C 0.074 3.926 10 C 0.047 3.953 11 F -0.125 7.125 12 C 0.053 3.947 13 O -0.495 6.495 14 C -0.036 4.036 15 N -0.429 5.429 16 C -0.070 4.070 17 C 0.352 3.648 18 F -0.207 7.207 19 F -0.198 7.198 20 H 0.292 0.708 21 H 0.377 0.623 22 H 0.141 0.859 23 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -2.194 -1.434 3.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.458 4.458 8 H 0.121 0.879 9 C 0.067 3.933 10 C 0.020 3.980 11 F -0.103 7.103 12 C 0.006 3.994 13 O -0.302 6.302 14 C -0.196 4.196 15 N -0.139 5.139 16 C -0.212 4.212 17 C 0.297 3.703 18 F -0.189 7.189 19 F -0.179 7.179 20 H 0.103 0.897 21 H 0.231 0.769 22 H 0.159 0.841 23 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.160 -2.612 -0.557 3.435 hybrid contribution 0.155 1.779 -0.993 2.043 sum 2.315 -0.834 -1.550 2.908 Atomic orbital electron populations 1.69765 1.08089 1.31003 1.28712 1.26019 0.94803 1.02106 0.92209 0.86077 0.80594 0.79315 0.79704 1.18828 1.19846 1.17934 1.19757 0.99537 0.90586 1.35888 0.87925 1.18110 0.90968 0.94239 0.89946 1.18503 1.01845 0.81033 0.96611 1.91369 1.91508 1.47499 1.79949 1.19452 0.92923 0.93045 0.94016 1.84833 1.33050 1.94751 1.17531 1.21757 1.02117 0.96205 0.99530 1.66484 1.05770 1.29792 1.11818 1.21019 1.06821 0.90234 1.03099 1.19493 0.77539 0.91112 0.82150 1.92919 1.44896 1.91665 1.89389 1.92970 1.90275 1.76204 1.58489 0.89722 0.76930 0.84121 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.59 11.06 55.55 0.61 -18.98 14 2 C 0.07 1.80 4.59 -17.34 -0.08 1.73 14 3 Si 0.92 18.58 29.60 -169.99 -5.03 13.55 14 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 7 C -0.43 -11.15 7.56 -37.77 -0.29 -11.44 14 8 H 0.10 2.59 6.37 -52.49 -0.33 2.26 14 9 C 0.07 1.92 5.39 -106.63 -0.58 1.35 14 10 C 0.05 1.22 6.76 -38.21 -0.26 0.97 14 11 F -0.12 -3.30 14.25 2.25 0.03 -3.26 14 12 C 0.05 1.22 6.73 -39.12 -0.26 0.96 14 13 O -0.49 -9.86 13.43 -19.68 -0.26 -10.12 14 14 C -0.04 -0.79 11.12 -17.19 -0.19 -0.98 14 15 N -0.43 -9.87 10.22 -8.73 -0.09 -9.96 14 16 C -0.07 -1.69 6.34 -81.81 -0.52 -2.21 14 17 C 0.35 7.44 5.11 36.00 0.18 7.62 14 18 F -0.21 -4.40 15.70 2.25 0.04 -4.37 14 19 F -0.20 -4.47 16.57 2.25 0.04 -4.43 14 20 H 0.29 6.87 8.30 -40.82 -0.34 6.53 14 21 H 0.38 5.39 9.06 45.56 0.41 5.80 14 22 H 0.14 2.62 8.06 -52.49 -0.42 2.20 14 23 H 0.11 1.86 8.11 -51.93 -0.42 1.44 14 LS Contribution 225.66 15.07 3.40 3.40 Total: -1.00 -29.28 225.66 -3.15 -32.43 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 0.10 Total: 3.76 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.99 Total: -2.01 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.52 Total: -28.94 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.26 Total: -10.12 kcal Atomic # 9 Polarization: -12.17 SS G_CDS: 0.10 Total: -12.06 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.28 -3.15 -32.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238729412.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.597 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds