Wall clock time and date at job start Mon Mar 30 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86792 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47529 * 270.00356 * 3 2 1 5 5 H 1.48505 * 109.47072 * 30.00209 * 3 2 1 6 6 H 1.48501 * 109.47484 * 150.00028 * 3 2 1 7 7 C 1.39929 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99548 * 199.46696 * 7 2 1 9 9 C 1.41346 * 120.00430 * 19.46041 * 7 2 1 10 10 C 1.41268 * 120.65591 * 35.92856 * 9 7 2 11 11 F 1.35108 * 120.94924 * 359.94981 * 10 9 7 12 12 C 1.38840 * 118.10317 * 179.97438 * 10 9 7 13 13 O 1.35982 * 120.35878 * 180.02562 * 12 10 9 14 14 C 1.38875 * 119.28587 * 359.97432 * 12 10 9 15 15 N 1.32118 * 121.28586 * 0.02562 * 14 12 10 16 16 C 1.31464 * 122.10775 * 359.97438 * 15 14 12 17 17 C 1.50696 * 119.73152 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.47354 * 120.00296 * 17 16 15 19 19 F 1.39899 * 109.47285 * 240.00317 * 17 16 15 20 20 H 0.97004 * 119.99804 * 359.97438 * 1 2 3 21 21 H 0.96698 * 113.99964 * 89.99251 * 13 12 10 22 22 H 1.07996 * 119.35584 * 180.02562 * 14 12 10 23 23 H 1.09003 * 109.47493 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0464 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5401 1.4401 0.7000 7 6 2.0081 -1.2119 -0.0005 8 1 3.0418 -1.2387 0.3112 9 6 1.3619 -2.4008 -0.4089 10 6 0.4105 -2.3815 -1.4530 11 9 0.0950 -1.2294 -2.0843 12 6 -0.1915 -3.5801 -1.8115 13 8 -1.1133 -3.6144 -2.8106 14 6 0.1586 -4.7439 -1.1394 15 7 1.0522 -4.7318 -0.1663 16 6 1.6543 -3.6274 0.2158 17 6 2.6658 -3.6754 1.3318 18 9 3.9044 -3.2297 0.8581 19 9 2.2433 -2.8508 2.3799 20 1 -0.4850 0.8401 0.0004 21 1 -0.7372 -3.7712 -3.6875 22 1 -0.3087 -5.6769 -1.4176 23 1 2.7620 -4.6999 1.6913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238729412.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:13 Heat of formation + Delta-G solvation = -184.868428 kcal Electronic energy + Delta-G solvation = -16623.232643 eV Core-core repulsion = 13213.832305 eV Total energy + Delta-G solvation = -3409.400338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.70387 -49.28104 -47.69265 -40.58649 -38.16774 -35.94776 -32.61015 -31.71778 -28.30951 -26.52953 -23.96096 -22.88558 -19.98844 -19.12983 -18.68214 -18.40104 -17.97116 -17.25705 -16.99255 -16.51437 -16.22108 -15.48697 -14.94076 -14.80964 -14.69929 -14.10794 -13.94284 -13.85472 -13.61320 -13.25478 -13.17429 -12.76555 -12.43644 -12.11368 -11.43040 -11.29791 -10.36078 -9.83655 -9.76128 -8.94877 -6.73306 0.15089 0.58949 1.32025 1.41201 1.47506 2.10535 2.46352 2.88057 3.01515 3.27999 3.46451 3.64120 3.98876 4.32546 4.38869 4.56548 4.87988 4.97475 5.14753 5.40572 5.59792 6.05451 6.35047 6.51280 6.80200 7.22873 8.05391 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.015657 C = 0.009805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.433421 B = 1787.927256 C = 2854.933725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.251 1.251 7 C -0.461 4.461 8 H 0.099 0.901 9 C 0.048 3.952 10 C 0.008 3.992 11 F -0.137 7.137 12 C 0.064 3.936 13 O -0.496 6.496 14 C -0.029 4.029 15 N -0.428 5.428 16 C -0.083 4.083 17 C 0.350 3.650 18 F -0.209 7.209 19 F -0.209 7.209 20 H 0.297 0.703 21 H 0.405 0.595 22 H 0.180 0.820 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -2.898 -1.638 4.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.174 1.174 7 C -0.488 4.488 8 H 0.117 0.883 9 C 0.042 3.958 10 C -0.020 4.020 11 F -0.116 7.116 12 C 0.016 3.984 13 O -0.307 6.307 14 C -0.188 4.188 15 N -0.137 5.137 16 C -0.224 4.224 17 C 0.296 3.704 18 F -0.191 7.191 19 F -0.190 7.190 20 H 0.108 0.892 21 H 0.263 0.737 22 H 0.197 0.803 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.361 -3.339 -0.779 4.163 hybrid contribution 0.005 1.812 -1.019 2.079 sum 2.366 -1.526 -1.798 3.341 Atomic orbital electron populations 1.69804 1.09503 1.32068 1.30328 1.26872 0.95420 1.05149 0.91143 0.85131 0.79414 0.75212 0.79844 1.18463 1.18654 1.17401 1.19887 0.99605 0.91573 1.37725 0.88313 1.18499 0.91616 0.95313 0.90404 1.18931 1.03611 0.81710 0.97698 1.91318 1.91769 1.48316 1.80183 1.19541 0.92044 0.92363 0.94463 1.84749 1.32583 1.94685 1.18683 1.22426 1.00989 0.97210 0.98218 1.66608 1.05975 1.29119 1.12045 1.21513 1.07315 0.89953 1.03647 1.19836 0.76675 0.92695 0.81158 1.92908 1.44831 1.91883 1.89455 1.92944 1.90430 1.76858 1.58805 0.89210 0.73681 0.80277 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.96 11.06 21.82 0.24 -41.72 14 2 C 0.03 1.71 4.59 85.25 0.39 2.10 14 3 Si 0.98 38.15 29.60 68.60 2.03 40.18 14 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 14 5 H -0.26 -9.56 7.11 99.48 0.71 -8.86 14 6 H -0.25 -9.38 7.11 99.48 0.71 -8.67 14 7 C -0.46 -24.19 7.56 23.44 0.18 -24.01 14 8 H 0.10 5.07 6.37 -2.91 -0.02 5.05 14 9 C 0.05 2.50 5.39 -21.16 -0.11 2.39 14 10 C 0.01 0.41 6.76 23.16 0.16 0.57 14 11 F -0.14 -7.36 14.25 44.97 0.64 -6.71 14 12 C 0.06 2.83 6.73 22.57 0.15 2.98 14 13 O -0.50 -18.61 13.43 -93.35 -1.25 -19.86 14 14 C -0.03 -1.17 11.12 84.80 0.94 -0.23 14 15 N -0.43 -18.76 10.22 -181.53 -1.86 -20.62 14 16 C -0.08 -3.93 6.34 43.22 0.27 -3.65 14 17 C 0.35 14.37 5.11 71.23 0.36 14.74 14 18 F -0.21 -8.71 15.70 44.97 0.71 -8.01 14 19 F -0.21 -9.32 16.57 44.97 0.75 -8.58 14 20 H 0.30 14.23 8.30 -92.71 -0.77 13.46 14 21 H 0.41 10.42 9.06 -74.06 -0.67 9.74 14 22 H 0.18 5.89 8.06 -2.91 -0.02 5.87 14 23 H 0.15 4.81 8.11 -2.39 -0.02 4.79 14 Total: -1.00 -62.40 225.66 4.22 -58.18 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.62 Total: 12.27 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 2.34 Total: -5.13 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -1.61 Total: -62.33 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.25 Total: -19.86 kcal Atomic # 9 Polarization: -25.39 SS G_CDS: 2.09 Total: -23.30 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -62.40 4.22 -58.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238729412.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.691 kcal (2) G-P(sol) polarization free energy of solvation -62.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds