Wall clock time and date at job start Mon Mar 30 2020 03:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48503 * 109.46996 * 239.99681 * 3 2 1 5 5 H 1.48505 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 119.99582 * 3 2 1 7 7 C 1.40060 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99956 * 160.19668 * 7 2 1 9 9 C 1.41120 * 119.99862 * 340.47213 * 7 2 1 10 10 C 1.41648 * 121.07881 * 144.72666 * 9 7 2 11 11 O 1.35666 * 120.63698 * 0.02562 * 10 9 7 12 12 C 1.38444 * 118.73133 * 179.97438 * 10 9 7 13 13 N 1.31889 * 120.97169 * 0.02562 * 12 10 9 14 14 C 1.32032 * 122.45181 * 359.97438 * 13 12 10 15 15 C 1.50699 * 119.43043 * 180.02562 * 14 13 12 16 16 F 1.39898 * 109.47166 * 119.99750 * 15 14 13 17 17 F 1.39909 * 109.46775 * 239.99549 * 15 14 13 18 18 C 1.37919 * 121.14015 * 359.72878 * 14 13 12 19 19 F 1.35092 * 120.56729 * 180.29357 * 18 14 13 20 20 H 0.96997 * 120.00506 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99894 * 95.09857 * 11 10 9 22 22 H 1.08002 * 119.51264 * 180.02562 * 12 10 9 23 23 H 1.08995 * 109.47164 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6966 1.2125 7 6 2.0081 -1.2129 0.0005 8 1 3.0402 -1.2406 -0.3163 9 6 1.3634 -2.3997 0.4096 10 6 1.6597 -3.6416 -0.2040 11 8 2.5744 -3.7184 -1.2029 12 6 0.9987 -4.7757 0.2359 13 7 0.1086 -4.7088 1.2069 14 6 -0.2001 -3.5746 1.8081 15 6 -1.2274 -3.5767 2.9107 16 9 -0.6436 -3.1093 4.0930 17 9 -2.2938 -2.7434 2.5560 18 6 0.4058 -2.3889 1.4487 19 9 0.0854 -1.2360 2.0757 20 1 -0.4851 0.8400 -0.0004 21 1 3.4625 -3.9592 -0.9054 22 1 1.2151 -5.7292 -0.2227 23 1 -1.5948 -4.5915 3.0631 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238729504.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:16 Heat of formation + Delta-G solvation = -163.732234 kcal Electronic energy + Delta-G solvation = -16570.598822 eV Core-core repulsion = 13162.115019 eV Total energy + Delta-G solvation = -3408.483803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.41031 -47.20068 -46.33100 -38.84380 -36.08250 -34.18594 -30.71766 -30.08096 -26.14469 -25.23311 -22.16816 -21.09942 -18.08947 -17.50047 -17.11786 -16.61253 -16.13526 -15.70396 -15.25849 -14.93076 -14.23883 -13.87049 -13.34725 -13.19565 -12.85745 -12.72280 -12.14524 -11.92239 -11.88480 -11.69882 -11.39098 -11.03941 -10.78557 -10.45739 -9.92417 -9.46048 -8.50909 -8.08041 -7.73368 -7.11887 -4.82452 1.95438 2.43798 2.95617 2.98713 3.03249 3.75460 4.23658 4.26296 4.74499 4.87843 5.20040 5.31968 5.62376 5.73873 5.84815 6.31506 6.63094 6.82778 6.98068 7.04954 7.61818 7.94486 8.18257 8.40783 8.66927 8.96492 9.87194 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.012932 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.194786 B = 2164.675090 C = 3031.310715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.072 3.928 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.430 4.430 8 H 0.094 0.906 9 C 0.074 3.926 10 C -0.027 4.027 11 O -0.480 6.480 12 C 0.079 3.921 13 N -0.522 5.522 14 C 0.003 3.997 15 C 0.330 3.670 16 F -0.203 7.203 17 F -0.198 7.198 18 C 0.047 3.953 19 F -0.123 7.123 20 H 0.293 0.707 21 H 0.361 0.639 22 H 0.141 0.859 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -2.585 2.270 3.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.152 4.152 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.459 4.459 8 H 0.112 0.888 9 C 0.065 3.935 10 C -0.077 4.077 11 O -0.286 6.286 12 C -0.077 4.077 13 N -0.238 5.238 14 C -0.131 4.131 15 C 0.275 3.725 16 F -0.184 7.184 17 F -0.180 7.180 18 C 0.022 3.978 19 F -0.101 7.101 20 H 0.104 0.896 21 H 0.214 0.786 22 H 0.158 0.842 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.454 -2.966 2.211 3.727 hybrid contribution 1.021 1.688 0.042 1.973 sum 1.475 -1.278 2.253 2.980 Atomic orbital electron populations 1.69709 1.08051 1.31141 1.28782 1.26009 0.94833 1.01971 0.92393 0.86126 0.80092 0.79152 0.80193 1.18632 1.19893 1.18397 1.19329 0.99255 0.90486 1.36862 0.88802 1.18141 0.91521 0.94205 0.89655 1.19432 1.00194 0.92844 0.95202 1.84801 1.20274 1.92030 1.31472 1.22324 0.94610 0.97156 0.93654 1.66910 1.19277 1.25640 1.11923 1.20888 1.00938 0.90394 1.00862 1.19971 0.81265 0.91812 0.79449 1.92966 1.85313 1.91044 1.49097 1.92996 1.57185 1.75563 1.92219 1.18409 1.01968 0.81215 0.96244 1.91394 1.91239 1.47500 1.79971 0.89606 0.78612 0.84217 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.72 11.04 55.55 0.61 -19.11 14 2 C 0.07 1.79 4.60 -17.32 -0.08 1.71 14 3 Si 0.92 18.38 29.60 -169.99 -5.03 13.35 14 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.27 -5.34 7.11 56.52 0.40 -4.93 14 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.43 -11.04 8.61 -37.81 -0.33 -11.36 14 8 H 0.09 2.25 7.91 -52.49 -0.41 1.84 14 9 C 0.07 1.92 5.44 -106.33 -0.58 1.34 14 10 C -0.03 -0.63 6.78 -38.21 -0.26 -0.89 14 11 O -0.48 -9.90 13.04 -18.70 -0.24 -10.14 14 12 C 0.08 1.71 11.12 -17.45 -0.19 1.51 14 13 N -0.52 -11.81 10.20 -9.45 -0.10 -11.90 14 14 C 0.00 0.06 6.28 -82.62 -0.52 -0.46 14 15 C 0.33 6.77 5.25 36.01 0.19 6.95 14 16 F -0.20 -4.22 17.03 2.25 0.04 -4.18 14 17 F -0.20 -4.34 17.06 2.25 0.04 -4.30 14 18 C 0.05 1.23 6.53 -38.53 -0.25 0.97 14 19 F -0.12 -3.32 13.49 2.25 0.03 -3.29 14 20 H 0.29 6.97 8.29 -40.82 -0.34 6.64 14 21 H 0.36 5.50 9.06 45.56 0.41 5.91 14 22 H 0.14 2.51 8.06 -52.49 -0.42 2.09 14 23 H 0.12 1.99 8.10 -51.93 -0.42 1.57 14 LS Contribution 228.83 15.07 3.45 3.45 Total: -1.00 -29.44 228.83 -3.20 -32.64 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.02 Total: 3.71 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.02 Total: -0.22 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.52 Total: -31.01 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.24 Total: -10.14 kcal Atomic # 9 Polarization: -11.88 SS G_CDS: 0.11 Total: -11.77 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.44 -3.20 -32.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238729504.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.088 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds