Wall clock time and date at job start Mon Mar 30 2020 03:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48503 * 109.46996 * 239.99681 * 3 2 1 5 5 H 1.48505 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 119.99582 * 3 2 1 7 7 C 1.40060 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99956 * 160.19668 * 7 2 1 9 9 C 1.41120 * 119.99862 * 340.47213 * 7 2 1 10 10 C 1.41648 * 121.07881 * 144.72666 * 9 7 2 11 11 O 1.35666 * 120.63698 * 0.02562 * 10 9 7 12 12 C 1.38444 * 118.73133 * 179.97438 * 10 9 7 13 13 N 1.31889 * 120.97169 * 0.02562 * 12 10 9 14 14 C 1.32032 * 122.45181 * 359.97438 * 13 12 10 15 15 C 1.50699 * 119.43043 * 180.02562 * 14 13 12 16 16 F 1.39898 * 109.47166 * 119.99750 * 15 14 13 17 17 F 1.39909 * 109.46775 * 239.99549 * 15 14 13 18 18 C 1.37919 * 121.14015 * 359.72878 * 14 13 12 19 19 F 1.35092 * 120.56729 * 180.29357 * 18 14 13 20 20 H 0.96997 * 120.00506 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99894 * 95.09857 * 11 10 9 22 22 H 1.08002 * 119.51264 * 180.02562 * 12 10 9 23 23 H 1.08995 * 109.47164 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6966 1.2125 7 6 2.0081 -1.2129 0.0005 8 1 3.0402 -1.2406 -0.3163 9 6 1.3634 -2.3997 0.4096 10 6 1.6597 -3.6416 -0.2040 11 8 2.5744 -3.7184 -1.2029 12 6 0.9987 -4.7757 0.2359 13 7 0.1086 -4.7088 1.2069 14 6 -0.2001 -3.5746 1.8081 15 6 -1.2274 -3.5767 2.9107 16 9 -0.6436 -3.1093 4.0930 17 9 -2.2938 -2.7434 2.5560 18 6 0.4058 -2.3889 1.4487 19 9 0.0854 -1.2360 2.0757 20 1 -0.4851 0.8400 -0.0004 21 1 3.4625 -3.9592 -0.9054 22 1 1.2151 -5.7292 -0.2227 23 1 -1.5948 -4.5915 3.0631 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238729504.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:16 Heat of formation + Delta-G solvation = -184.673853 kcal Electronic energy + Delta-G solvation = -16571.506919 eV Core-core repulsion = 13162.115019 eV Total energy + Delta-G solvation = -3409.391900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.09671 -49.13410 -47.99688 -40.62896 -37.79313 -36.00865 -32.56595 -31.83078 -28.00426 -26.93743 -23.99235 -22.87062 -19.90347 -19.25740 -18.82848 -18.28340 -17.91204 -17.43751 -17.06755 -16.69175 -16.12564 -15.59034 -15.12516 -14.88544 -14.54519 -14.39492 -14.01101 -13.69636 -13.63597 -13.42772 -13.08542 -12.74012 -12.42128 -12.09000 -11.66565 -11.23307 -10.32080 -9.93189 -9.56279 -8.93288 -6.72950 0.13406 0.60293 1.32652 1.44166 1.47415 2.10329 2.47606 2.58246 3.05982 3.17837 3.49237 3.64809 3.88882 4.07651 4.18810 4.56569 4.79865 4.99503 5.19096 5.28866 5.79497 6.06908 6.38028 6.54784 7.04351 7.20216 8.08311 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.012932 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.194786 B = 2164.675090 C = 3031.310715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.031 3.969 3 Si 0.990 3.010 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.101 0.899 9 C 0.043 3.957 10 C -0.024 4.024 11 O -0.486 6.486 12 C 0.080 3.920 13 N -0.513 5.513 14 C -0.002 4.002 15 C 0.329 3.671 16 F -0.206 7.206 17 F -0.208 7.208 18 C 0.006 3.994 19 F -0.138 7.138 20 H 0.296 0.704 21 H 0.389 0.611 22 H 0.183 0.817 23 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -3.367 2.060 4.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.189 4.189 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.118 0.882 9 C 0.034 3.966 10 C -0.074 4.074 11 O -0.294 6.294 12 C -0.076 4.076 13 N -0.229 5.229 14 C -0.137 4.137 15 C 0.275 3.725 16 F -0.187 7.187 17 F -0.190 7.190 18 C -0.019 4.019 19 F -0.116 7.116 20 H 0.107 0.893 21 H 0.245 0.755 22 H 0.199 0.801 23 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.139 -3.777 1.993 4.420 hybrid contribution 0.856 1.758 0.052 1.956 sum 1.996 -2.019 2.045 3.498 Atomic orbital electron populations 1.69770 1.09672 1.32126 1.30525 1.26943 0.95441 1.05304 0.91219 0.85104 0.78772 0.74658 0.80511 1.17263 1.19253 1.18224 1.19639 0.99808 0.91398 1.38418 0.88152 1.18628 0.92161 0.95724 0.90117 1.19580 1.00559 0.92482 0.94741 1.84705 1.21660 1.92096 1.30954 1.22934 0.93409 0.98306 0.92957 1.67059 1.19060 1.24822 1.11918 1.21387 1.01034 0.89896 1.01377 1.20337 0.80283 0.93520 0.78318 1.92955 1.85446 1.91293 1.49038 1.92973 1.57466 1.76221 1.92325 1.18799 1.03911 0.81699 0.97512 1.91334 1.91582 1.48398 1.80325 0.89281 0.75463 0.80064 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.61 11.04 21.85 0.24 -42.37 14 2 C 0.03 1.54 4.60 85.29 0.39 1.93 14 3 Si 0.99 37.67 29.60 68.60 2.03 39.70 14 4 H -0.25 -8.85 7.11 99.48 0.71 -8.14 14 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 14 6 H -0.26 -9.63 7.11 99.48 0.71 -8.93 14 7 C -0.46 -24.00 8.61 23.42 0.20 -23.80 14 8 H 0.10 4.83 7.91 -2.91 -0.02 4.80 14 9 C 0.04 2.23 5.44 -20.97 -0.11 2.11 14 10 C -0.02 -1.10 6.78 23.16 0.16 -0.95 14 11 O -0.49 -19.01 13.04 -89.83 -1.17 -20.18 14 12 C 0.08 3.23 11.12 84.73 0.94 4.17 14 13 N -0.51 -22.08 10.20 -183.80 -1.88 -23.96 14 14 C 0.00 -0.11 6.28 42.45 0.27 0.15 14 15 C 0.33 13.05 5.25 71.24 0.37 13.42 14 16 F -0.21 -8.39 17.03 44.97 0.77 -7.62 14 17 F -0.21 -8.99 17.06 44.97 0.77 -8.23 14 18 C 0.01 0.31 6.53 22.95 0.15 0.46 14 19 F -0.14 -7.66 13.49 44.97 0.61 -7.05 14 20 H 0.30 14.48 8.29 -92.71 -0.77 13.71 14 21 H 0.39 10.82 9.06 -74.05 -0.67 10.15 14 22 H 0.18 5.75 8.06 -2.91 -0.02 5.72 14 23 H 0.17 5.01 8.10 -2.39 -0.02 4.99 14 Total: -1.00 -63.33 228.83 4.35 -58.98 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.61 Total: 13.22 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 2.37 Total: -2.49 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -1.63 Total: -66.33 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.17 Total: -20.18 kcal Atomic # 9 Polarization: -25.04 SS G_CDS: 2.14 Total: -22.90 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -63.33 4.35 -58.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238729504.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.692 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds