Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48506 * 109.47117 * 269.99971 * 3 2 1 5 5 H 1.48503 * 109.47256 * 29.99684 * 3 2 1 6 6 H 1.48498 * 109.47317 * 150.00082 * 3 2 1 7 7 C 1.37869 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99843 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.32722 * 118.30239 * 274.97557 * 10 9 7 12 12 O 1.21285 * 116.41850 * 4.39706 * 11 10 9 13 13 C 1.49086 * 127.15557 * 184.37206 * 11 10 9 14 14 C 1.52455 * 112.56121 * 337.13769 * 13 11 10 15 15 C 1.53520 * 109.04310 * 56.10950 * 14 13 11 16 16 S 1.65393 * 118.29798 * 95.00026 * 10 9 7 17 17 O 1.42098 * 104.36778 * 48.68638 * 16 10 9 18 18 O 1.42099 * 104.45624 * 280.60236 * 16 10 9 19 19 H 0.97007 * 120.00376 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47213 * 59.99785 * 9 7 2 21 21 H 1.09001 * 109.46699 * 300.00050 * 9 7 2 22 22 H 1.08995 * 108.86438 * 97.91607 * 13 11 10 23 23 H 1.09002 * 108.86322 * 216.43537 * 13 11 10 24 24 H 1.08994 * 109.54274 * 296.23713 * 14 13 11 25 25 H 1.09001 * 109.54134 * 175.97611 * 14 13 11 26 26 H 1.08999 * 109.80368 * 172.43868 * 15 14 13 27 27 H 1.09000 * 109.80519 * 51.55677 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6890 -4.0250 -1.1636 12 8 2.3639 -3.3851 -2.1413 13 6 3.5910 -5.1879 -1.4017 14 6 4.3792 -5.5811 -0.1574 15 6 3.3976 -5.8654 0.9883 16 16 2.6161 -4.2910 1.4513 17 8 1.3728 -4.5212 2.0996 18 8 3.5760 -3.3982 1.9999 19 1 -0.4851 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5566 0.8903 22 1 2.9910 -6.0395 -1.7222 23 1 4.2928 -4.9328 -2.1958 24 1 5.0441 -4.7653 0.1261 25 1 4.9661 -6.4759 -0.3652 26 1 3.9360 -6.2758 1.8426 27 1 2.6369 -6.5718 0.6561 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259125162.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = -101.963930 kcal Electronic energy + Delta-G solvation = -15280.126165 eV Core-core repulsion = 12551.621528 eV Total energy + Delta-G solvation = -2728.504637 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79608 -36.76435 -35.67568 -35.17120 -34.56739 -32.36272 -28.46448 -27.31414 -23.82540 -22.23577 -21.33613 -18.11064 -17.25659 -16.74333 -16.55116 -15.87371 -15.30135 -14.74030 -14.49615 -14.39257 -13.83225 -13.11100 -12.90037 -12.24757 -11.96015 -11.85278 -11.65826 -11.60919 -11.43307 -11.12786 -10.87639 -10.58408 -10.47664 -10.12886 -9.95538 -9.37408 -8.73423 -8.41931 -6.04576 -4.08112 0.35814 2.75015 2.92650 3.36993 3.41298 3.48035 3.93180 4.07109 4.20678 4.33094 4.48078 4.81788 4.99535 5.09646 5.23792 5.32350 5.49997 5.59508 5.74955 6.28531 6.95779 7.27826 7.52571 7.91803 8.12921 8.34694 8.93621 9.55815 11.05410 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.010339 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.883426 B = 2707.609733 C = 2968.723100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.235 3.765 10 N -0.914 5.914 11 C 0.505 3.495 12 O -0.499 6.499 13 C -0.145 4.145 14 C -0.113 4.113 15 C -0.631 4.631 16 S 2.594 3.406 17 O -0.948 6.948 18 O -0.932 6.932 19 H 0.265 0.735 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.141 0.859 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.936 -13.860 0.478 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.116 3.884 10 N -0.758 5.758 11 C 0.290 3.710 12 O -0.370 6.370 13 C -0.185 4.185 14 C -0.151 4.151 15 C -0.759 4.759 16 S 2.686 3.314 17 O -0.938 6.938 18 O -0.922 6.922 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.127 0.873 23 H 0.136 0.864 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.159 0.841 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.447 -13.027 0.753 15.024 hybrid contribution 0.566 0.363 -0.373 0.769 sum 8.013 -12.664 0.380 14.991 Atomic orbital electron populations 1.69936 1.06018 1.27268 1.50119 1.24922 0.94949 0.99407 0.94779 0.86414 0.79895 0.82514 0.78185 1.20485 1.21025 1.19550 1.21345 0.93782 0.89955 1.51603 0.91540 1.19596 0.87005 0.81281 1.00546 1.56093 1.53297 1.44425 1.22035 1.19799 0.81430 0.85700 0.84050 1.90730 1.55240 1.51959 1.39112 1.21629 0.99244 0.97208 1.00409 1.21381 0.97271 1.04605 0.91850 1.30639 1.12300 1.23537 1.09458 1.05831 0.75435 0.76301 0.73790 1.93602 1.41879 1.85861 1.72493 1.93631 1.63478 1.59450 1.75660 0.92552 0.92144 0.92755 0.87333 0.86434 0.89143 0.88274 0.84109 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.52 15 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 15 3 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 15 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.27 -6.74 7.11 56.52 0.40 -6.33 15 7 C -0.53 -15.61 9.18 -34.44 -0.32 -15.93 15 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 15 9 C 0.23 6.32 4.81 -5.19 -0.02 6.30 15 10 N -0.91 -19.36 2.77 -62.56 -0.17 -19.53 15 11 C 0.51 9.54 7.38 -12.66 -0.09 9.44 15 12 O -0.50 -11.75 15.96 5.55 0.09 -11.66 15 13 C -0.14 -1.66 5.64 -28.93 -0.16 -1.82 15 14 C -0.11 -1.05 5.92 -26.74 -0.16 -1.20 15 15 C -0.63 -6.25 6.53 37.43 0.24 -6.01 15 16 S 2.59 45.70 5.48 -107.50 -0.59 45.12 15 17 O -0.95 -19.39 17.15 -57.53 -0.99 -20.37 15 18 O -0.93 -19.50 18.11 -57.53 -1.04 -20.55 15 19 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 20 H 0.06 1.74 7.37 -51.93 -0.38 1.35 15 21 H 0.05 1.52 7.25 -51.93 -0.38 1.15 15 22 H 0.11 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.12 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.09 0.90 8.11 -51.93 -0.42 0.48 15 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.14 0.99 8.14 -51.93 -0.42 0.56 15 27 H 0.14 1.06 8.13 -51.93 -0.42 0.64 15 LS Contribution 248.07 15.07 3.74 3.74 Total: -1.00 -37.86 248.07 -6.70 -44.56 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -2.84 Total: -4.98 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.61 Total: -7.48 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.56 Total: -46.05 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -1.94 Total: -52.58 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 45.70 SS G_CDS: -0.59 Total: 45.12 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -37.86 -6.70 -44.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259125162.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.404 kcal (2) G-P(sol) polarization free energy of solvation -37.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds