Wall clock time and date at job start Mon Mar 30 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.76449 * 2 1 4 4 C 1.54928 * 109.77668 * 239.22755 * 2 1 3 5 5 S 1.83499 * 100.07658 * 215.46530 * 4 2 1 6 6 O 1.42105 * 111.42327 * 273.10361 * 5 4 2 7 7 O 1.42104 * 111.42289 * 133.20980 * 5 4 2 8 8 N 1.66836 * 98.06332 * 23.15886 * 5 4 2 9 9 C 1.37098 * 125.25989 * 165.57322 * 8 5 4 10 10 H 1.08003 * 120.00026 * 325.09398 * 9 8 5 11 11 C 1.38946 * 120.00003 * 145.09286 * 9 8 5 12 12 N 1.31412 * 120.00164 * 339.68560 * 11 9 8 13 13 Si 1.86802 * 119.99973 * 159.68636 * 11 9 8 14 14 H 1.48494 * 109.47280 * 94.24077 * 13 11 9 15 15 H 1.48496 * 109.47244 * 214.24524 * 13 11 9 16 16 H 1.48498 * 109.47001 * 334.24027 * 13 11 9 17 17 C 1.33795 * 109.48164 * 345.53706 * 8 5 4 18 18 O 1.21300 * 121.20542 * 179.54421 * 17 8 5 19 19 H 1.08997 * 109.47123 * 300.70633 * 1 2 3 20 20 H 1.08998 * 109.47315 * 60.70792 * 1 2 3 21 21 H 1.08996 * 109.46921 * 180.70893 * 1 2 3 22 22 H 1.08998 * 109.46393 * 179.29149 * 3 2 1 23 23 H 1.08996 * 109.46730 * 299.28921 * 3 2 1 24 24 H 1.08995 * 109.47198 * 59.29587 * 3 2 1 25 25 H 1.09002 * 111.28736 * 97.75008 * 4 2 1 26 26 H 1.09001 * 111.28771 * 333.18031 * 4 2 1 27 27 H 0.96997 * 119.99892 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0474 1.4399 0.0000 4 6 2.0542 -0.7459 -1.2526 5 16 3.5476 -1.5464 -0.5481 6 8 4.6769 -0.6863 -0.6128 7 8 3.6238 -2.9171 -0.9153 8 7 3.0810 -1.5435 1.0537 9 6 3.6756 -2.2703 2.0525 10 1 4.0731 -3.2523 1.8425 11 6 3.7667 -1.7437 3.3351 12 7 3.6651 -0.4469 3.5217 13 14 4.0338 -2.8791 4.7942 14 1 5.4857 -2.9682 5.0929 15 1 3.3170 -2.3408 5.9780 16 1 3.5109 -4.2310 4.4716 17 6 2.0374 -0.7214 1.2130 18 8 1.5206 -0.5651 2.2992 19 1 -0.3633 0.5248 0.8836 20 1 -0.3634 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0127 22 1 3.1373 1.4342 0.0127 23 1 1.6971 1.9518 -0.8963 24 1 1.6765 1.9593 0.8836 25 1 2.3170 -0.0480 -2.0477 26 1 1.3352 -1.4871 -1.6016 27 1 3.7283 -0.0793 4.4171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259417650.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:57 Heat of formation + Delta-G solvation = -96.286713 kcal Electronic energy + Delta-G solvation = -15679.547873 eV Core-core repulsion = 12951.289418 eV Total energy + Delta-G solvation = -2728.258455 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42631 -36.10715 -35.23753 -34.83377 -34.14692 -31.82005 -27.59208 -27.00391 -25.56271 -22.29182 -19.75253 -18.78005 -17.32196 -16.24493 -15.46733 -15.13603 -14.94112 -14.32715 -13.88724 -13.66587 -13.45508 -13.16925 -12.08030 -11.99770 -11.86252 -11.59290 -11.31615 -11.19766 -11.13717 -11.10467 -11.00500 -10.76022 -10.65861 -10.34263 -9.79714 -9.42736 -8.73400 -8.07892 -6.60408 -4.26892 0.95121 3.13230 3.20108 3.25053 3.50964 3.66873 4.12641 4.35664 4.53546 4.72209 4.85405 4.98623 5.42546 5.57918 5.74670 5.85051 5.93954 6.11002 6.14320 6.17226 6.44831 6.60124 7.06197 7.38563 8.22450 8.41578 8.89565 9.38209 10.45271 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.013655 C = 0.011057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.150534 B = 2050.090173 C = 2531.722863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.606 4.606 5 S 2.457 3.543 6 O -0.978 6.978 7 O -0.966 6.966 8 N -0.737 5.737 9 C -0.276 4.276 10 H 0.113 0.887 11 C 0.055 3.945 12 N -0.782 5.782 13 Si 0.934 3.066 14 H -0.273 1.273 15 H -0.276 1.276 16 H -0.261 1.261 17 C 0.474 3.526 18 O -0.480 6.480 19 H 0.070 0.930 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 1.597 -5.404 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.197 4.197 4 C -0.732 4.732 5 S 2.565 3.435 6 O -0.966 6.966 7 O -0.956 6.956 8 N -0.567 5.567 9 C -0.418 4.418 10 H 0.130 0.870 11 C -0.163 4.163 12 N -0.414 5.414 13 Si 0.758 3.242 14 H -0.198 1.198 15 H -0.201 1.201 16 H -0.185 1.185 17 C 0.257 3.743 18 O -0.353 6.353 19 H 0.089 0.911 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.075 1.534 -5.322 6.876 hybrid contribution -0.293 0.019 0.502 0.581 sum -4.368 1.554 -4.820 6.688 Atomic orbital electron populations 1.21616 0.91171 1.02531 1.02330 1.20819 0.99353 0.97079 0.90636 1.21869 1.02443 0.92705 1.02652 1.30783 1.23444 1.12880 1.06084 1.12894 0.77186 0.75683 0.77724 1.93474 1.49814 1.67938 1.85371 1.93473 1.86661 1.32333 1.83178 1.51541 1.32363 1.47037 1.25758 1.19531 1.38974 0.96859 0.86416 0.86974 1.25685 0.94592 0.95919 1.00132 1.69935 1.35751 1.11579 1.24170 0.85831 0.78461 0.80305 0.79592 1.19839 1.20149 1.18542 1.19883 0.81343 0.82583 0.90453 1.90533 1.57259 1.61449 1.26013 0.91099 0.92020 0.92239 0.91138 0.91744 0.90895 0.85146 0.84932 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.14 37.16 0.30 -1.51 15 2 C -0.07 -1.36 0.82 -154.99 -0.13 -1.49 15 3 C -0.14 -2.38 8.37 37.16 0.31 -2.07 15 4 C -0.61 -9.91 6.70 38.17 0.26 -9.65 15 5 S 2.46 54.78 6.17 -107.50 -0.66 54.12 15 6 O -0.98 -24.49 18.03 -57.38 -1.03 -25.53 15 7 O -0.97 -23.28 18.02 -57.38 -1.03 -24.32 15 8 N -0.74 -18.84 2.98 -11.44 -0.03 -18.87 15 9 C -0.28 -7.46 9.75 -14.93 -0.15 -7.60 15 10 H 0.11 2.87 7.91 -52.48 -0.42 2.46 15 11 C 0.06 1.46 4.67 -17.47 -0.08 1.38 15 12 N -0.78 -21.71 11.35 55.50 0.63 -21.08 15 13 Si 0.93 20.15 29.60 -169.99 -5.03 15.12 15 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 16 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 17 C 0.47 11.44 5.86 -11.77 -0.07 11.37 15 18 O -0.48 -13.00 14.39 5.54 0.08 -12.92 15 19 H 0.07 1.13 7.98 -51.93 -0.41 0.71 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.07 1.34 8.03 -51.93 -0.42 0.92 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.13 1.72 7.88 -51.93 -0.41 1.31 15 26 H 0.13 1.83 7.92 -51.93 -0.41 1.42 15 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 246.77 15.07 3.72 3.72 Total: -1.00 -33.70 246.77 -5.82 -39.51 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -2.89 Total: -0.18 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 0.45 Total: -9.58 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.60 Total: -39.95 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -1.99 Total: -62.76 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 54.78 SS G_CDS: -0.66 Total: 54.12 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.70 -5.82 -39.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259417650.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.772 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds