Wall clock time and date at job start Mon Mar 30 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.76449 * 2 1 4 4 C 1.54928 * 109.77668 * 239.22755 * 2 1 3 5 5 S 1.83499 * 100.07658 * 215.46530 * 4 2 1 6 6 O 1.42105 * 111.42327 * 273.10361 * 5 4 2 7 7 O 1.42104 * 111.42289 * 133.20980 * 5 4 2 8 8 N 1.66836 * 98.06332 * 23.15886 * 5 4 2 9 9 C 1.37098 * 125.25989 * 165.57322 * 8 5 4 10 10 H 1.08003 * 120.00026 * 325.09398 * 9 8 5 11 11 C 1.38946 * 120.00003 * 145.09286 * 9 8 5 12 12 N 1.31412 * 120.00164 * 339.68560 * 11 9 8 13 13 Si 1.86802 * 119.99973 * 159.68636 * 11 9 8 14 14 H 1.48494 * 109.47280 * 94.24077 * 13 11 9 15 15 H 1.48496 * 109.47244 * 214.24524 * 13 11 9 16 16 H 1.48498 * 109.47001 * 334.24027 * 13 11 9 17 17 C 1.33795 * 109.48164 * 345.53706 * 8 5 4 18 18 O 1.21300 * 121.20542 * 179.54421 * 17 8 5 19 19 H 1.08997 * 109.47123 * 300.70633 * 1 2 3 20 20 H 1.08998 * 109.47315 * 60.70792 * 1 2 3 21 21 H 1.08996 * 109.46921 * 180.70893 * 1 2 3 22 22 H 1.08998 * 109.46393 * 179.29149 * 3 2 1 23 23 H 1.08996 * 109.46730 * 299.28921 * 3 2 1 24 24 H 1.08995 * 109.47198 * 59.29587 * 3 2 1 25 25 H 1.09002 * 111.28736 * 97.75008 * 4 2 1 26 26 H 1.09001 * 111.28771 * 333.18031 * 4 2 1 27 27 H 0.96997 * 119.99892 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0474 1.4399 0.0000 4 6 2.0542 -0.7459 -1.2526 5 16 3.5476 -1.5464 -0.5481 6 8 4.6769 -0.6863 -0.6128 7 8 3.6238 -2.9171 -0.9153 8 7 3.0810 -1.5435 1.0537 9 6 3.6756 -2.2703 2.0525 10 1 4.0731 -3.2523 1.8425 11 6 3.7667 -1.7437 3.3351 12 7 3.6651 -0.4469 3.5217 13 14 4.0338 -2.8791 4.7942 14 1 5.4857 -2.9682 5.0929 15 1 3.3170 -2.3408 5.9780 16 1 3.5109 -4.2310 4.4716 17 6 2.0374 -0.7214 1.2130 18 8 1.5206 -0.5651 2.2992 19 1 -0.3633 0.5248 0.8836 20 1 -0.3634 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0127 22 1 3.1373 1.4342 0.0127 23 1 1.6971 1.9518 -0.8963 24 1 1.6765 1.9593 0.8836 25 1 2.3170 -0.0480 -2.0477 26 1 1.3352 -1.4871 -1.6016 27 1 3.7283 -0.0793 4.4171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259417650.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:57 Heat of formation + Delta-G solvation = -123.928907 kcal Electronic energy + Delta-G solvation = -15680.746528 eV Core-core repulsion = 12951.289418 eV Total energy + Delta-G solvation = -2729.457110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17995 -38.07157 -36.97507 -36.68556 -36.06061 -33.68186 -29.10430 -28.27606 -27.38218 -24.03319 -21.46181 -20.63361 -19.22304 -18.02006 -17.24648 -16.95038 -16.77834 -16.02361 -15.56415 -15.44876 -14.95915 -14.74333 -13.82658 -13.53923 -13.35446 -13.17727 -13.02519 -12.91189 -12.82708 -12.72581 -12.70980 -12.54125 -12.15525 -12.04029 -11.50973 -11.25363 -10.59987 -9.98716 -8.48074 -6.29645 -0.78927 1.36368 1.42056 1.52473 1.69371 1.86915 2.33599 2.67558 2.80275 3.09230 3.14536 3.42375 3.92992 4.07812 4.37192 4.54877 4.73645 4.79372 4.89856 4.94744 5.17606 5.25030 5.34052 5.56059 6.33656 6.54599 7.05344 7.53609 8.60896 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.013655 C = 0.011057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.150534 B = 2050.090173 C = 2531.722863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.547 4.547 5 S 2.493 3.507 6 O -0.999 6.999 7 O -0.988 6.988 8 N -0.767 5.767 9 C -0.358 4.358 10 H 0.104 0.896 11 C 0.015 3.985 12 N -0.841 5.841 13 Si 0.989 3.011 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.257 1.257 17 C 0.451 3.549 18 O -0.522 6.522 19 H 0.056 0.944 20 H 0.113 0.887 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.121 0.879 24 H 0.059 0.941 25 H 0.191 0.809 26 H 0.181 0.819 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 2.351 -9.047 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.198 4.198 4 C -0.680 4.680 5 S 2.601 3.399 6 O -0.989 6.989 7 O -0.979 6.979 8 N -0.599 5.599 9 C -0.490 4.490 10 H 0.121 0.879 11 C -0.196 4.196 12 N -0.474 5.474 13 Si 0.810 3.190 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.180 1.180 17 C 0.237 3.763 18 O -0.397 6.397 19 H 0.075 0.925 20 H 0.131 0.869 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.140 0.860 24 H 0.079 0.921 25 H 0.209 0.791 26 H 0.199 0.801 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.824 2.206 -8.782 10.766 hybrid contribution 0.073 -0.135 1.154 1.164 sum -5.751 2.071 -7.628 9.775 Atomic orbital electron populations 1.21698 0.87928 1.03463 1.04304 1.21055 1.01872 0.97149 0.88171 1.21964 1.00841 0.91997 1.05010 1.30709 1.17313 1.13676 1.06319 1.09458 0.78771 0.75423 0.76244 1.93504 1.51374 1.68267 1.85708 1.93487 1.87788 1.33824 1.82786 1.51644 1.33879 1.47808 1.26532 1.19407 1.41824 0.98864 0.88924 0.87880 1.26427 0.93968 0.96981 1.02266 1.70023 1.40479 1.13020 1.23921 0.85041 0.78839 0.78636 0.76496 1.18615 1.20287 1.18036 1.21255 0.80404 0.82366 0.92278 1.90494 1.58093 1.62812 1.28279 0.92474 0.86876 0.91856 0.93667 0.86035 0.92142 0.79116 0.80135 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.14 71.98 0.59 -2.34 15 2 C -0.08 -2.52 0.82 -52.49 -0.04 -2.56 15 3 C -0.14 -4.24 8.37 71.98 0.60 -3.63 15 4 C -0.55 -13.92 6.70 72.64 0.49 -13.43 15 5 S 2.49 105.55 6.17 -56.49 -0.35 105.20 15 6 O -1.00 -48.61 18.03 -127.80 -2.30 -50.92 15 7 O -0.99 -45.89 18.02 -127.80 -2.30 -48.19 15 8 N -0.77 -39.95 2.98 -309.03 -0.92 -40.87 15 9 C -0.36 -20.55 9.75 84.04 0.82 -19.73 15 10 H 0.10 5.73 7.91 -2.91 -0.02 5.71 15 11 C 0.02 0.86 4.67 84.93 0.40 1.26 15 12 N -0.84 -50.21 11.35 21.66 0.25 -49.96 15 13 Si 0.99 44.18 29.60 68.60 2.03 46.21 15 14 H -0.26 -10.96 7.11 99.48 0.71 -10.26 15 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 17 C 0.45 21.77 5.86 87.58 0.51 22.28 15 18 O -0.52 -29.37 14.39 -3.09 -0.04 -29.42 15 19 H 0.06 1.64 7.98 -2.39 -0.02 1.62 15 20 H 0.11 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.04 1.59 8.03 -2.39 -0.02 1.57 15 23 H 0.12 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.19 3.03 7.88 -2.39 -0.02 3.01 15 26 H 0.18 3.30 7.92 -2.39 -0.02 3.28 15 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 Total: -1.00 -81.79 246.77 0.89 -80.91 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.17 Total: 5.20 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.36 Total: -18.16 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -0.68 Total: -90.83 kcal Atomic # 8 Polarization: -123.87 SS G_CDS: -4.65 Total: -128.52 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 105.55 SS G_CDS: -0.35 Total: 105.20 kcal Total: -81.79 0.89 -80.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259417650.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.024 kcal (2) G-P(sol) polarization free energy of solvation -81.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds