Wall clock time and date at job start Mon Mar 30 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86798 * 119.99786 * 2 1 4 4 H 1.48501 * 109.47396 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47028 * 119.99635 * 3 2 1 6 6 H 1.48494 * 109.47292 * 239.99639 * 3 2 1 7 7 C 1.40272 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99724 * 356.73879 * 7 2 1 9 9 C 1.40229 * 120.00230 * 176.73145 * 7 2 1 10 10 N 1.33414 * 128.01683 * 187.47206 * 9 7 2 11 11 C 1.31283 * 113.41192 * 179.87408 * 10 9 7 12 12 C 1.48355 * 120.66213 * 180.20947 * 11 10 9 13 13 C 1.39784 * 120.91246 * 359.97438 * 12 11 10 14 14 C 1.37995 * 119.02064 * 179.77450 * 13 12 11 15 15 N 1.31913 * 120.88436 * 0.52003 * 14 13 12 16 16 C 1.31918 * 122.00960 * 359.73303 * 15 14 13 17 17 C 1.37991 * 120.88656 * 0.02562 * 16 15 14 18 18 N 1.31040 * 118.67534 * 0.46038 * 11 10 9 19 19 S 1.56684 * 108.56981 * 359.74590 * 18 11 10 20 20 H 0.97000 * 119.99839 * 175.72299 * 1 2 3 21 21 H 1.08008 * 120.48593 * 0.02562 * 13 12 11 22 22 H 1.07995 * 119.55805 * 180.27226 * 14 13 12 23 23 H 1.07999 * 119.55244 * 180.02562 * 16 15 14 24 24 H 1.07997 * 120.49414 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2754 2.7465 -0.0006 5 1 3.0941 1.6965 1.2126 6 1 3.0942 1.6965 -1.2124 7 6 2.0079 -1.2148 0.0005 8 1 1.4692 -2.1493 0.0542 9 6 3.4085 -1.2158 -0.0687 10 7 4.2231 -2.2621 -0.2156 11 6 5.4937 -1.9334 -0.2474 12 6 6.5401 -2.9724 -0.4101 13 6 6.1988 -4.3224 -0.5324 14 6 7.2035 -5.2557 -0.6867 15 7 8.4705 -4.8892 -0.7091 16 6 8.8354 -3.6269 -0.5919 17 6 7.8949 -2.6289 -0.4388 18 7 5.8196 -0.6698 -0.1277 19 16 4.5068 0.1715 0.0267 20 1 -0.4850 -0.8377 -0.0627 21 1 5.1636 -4.6300 -0.5106 22 1 6.9493 -6.3006 -0.7864 23 1 9.8845 -3.3713 -0.6160 24 1 8.2007 -1.5975 -0.3438 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259434686.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:14 Heat of formation + Delta-G solvation = 38.996660 kcal Electronic energy + Delta-G solvation = -13073.966558 eV Core-core repulsion = 10691.176102 eV Total energy + Delta-G solvation = -2382.790456 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.34960 -40.07155 -36.42159 -33.96111 -32.85302 -32.11184 -29.64527 -26.25998 -24.32452 -23.07757 -21.22449 -20.76559 -19.14743 -17.95564 -16.82523 -16.53516 -16.33532 -16.09033 -15.73173 -15.11833 -14.73600 -14.58875 -14.47968 -13.33361 -13.22714 -12.66683 -12.31169 -12.03167 -11.57406 -11.28163 -11.17673 -10.83988 -10.58833 -10.22599 -10.12686 -9.83531 -9.46821 -7.16102 -0.32182 0.18664 0.44200 0.75513 1.01172 1.41123 1.42352 1.97236 2.04969 2.07178 2.71866 3.00808 3.27303 3.56296 3.94347 4.12736 4.16444 4.48076 4.65191 4.87739 5.00670 5.08195 5.10455 5.38515 5.57518 5.70274 5.78989 6.03136 6.93901 7.24040 7.55737 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.056411 B = 0.007374 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.240153 B = 3796.267397 C = 4277.907050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.035 3.965 3 Si 0.956 3.044 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.212 1.212 7 C -0.395 4.395 8 H 0.094 0.906 9 C 0.149 3.851 10 N -0.615 5.615 11 C 0.293 3.707 12 C 0.012 3.988 13 C -0.144 4.144 14 C 0.100 3.900 15 N -0.496 5.496 16 C 0.100 3.900 17 C -0.145 4.145 18 N -0.649 5.649 19 S 0.124 5.876 20 H 0.299 0.701 21 H 0.137 0.863 22 H 0.192 0.808 23 H 0.193 0.807 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -1.392 -0.573 6.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.120 1.120 5 H -0.129 1.129 6 H -0.137 1.137 7 C -0.443 4.443 8 H 0.112 0.888 9 C -0.103 4.103 10 N -0.350 5.350 11 C 0.007 3.993 12 C -0.001 4.001 13 C -0.166 4.166 14 C -0.057 4.057 15 N -0.206 5.206 16 C -0.056 4.056 17 C -0.168 4.168 18 N -0.490 5.490 19 S 0.271 5.729 20 H 0.111 0.889 21 H 0.155 0.845 22 H 0.209 0.791 23 H 0.210 0.790 24 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.643 0.611 -0.530 7.685 hybrid contribution -1.242 -2.080 0.018 2.423 sum 6.400 -1.469 -0.512 6.587 Atomic orbital electron populations 1.70521 1.07602 1.34102 1.26391 1.28258 0.95938 1.05335 0.89635 0.84405 0.79234 0.74543 0.84625 1.12014 1.12926 1.13668 1.20329 0.88166 0.97892 1.37952 0.88843 1.26271 0.98739 0.90002 0.95253 1.69041 1.00541 1.28872 1.36517 1.21696 0.90429 0.89353 0.97822 1.18650 0.91645 0.91709 0.98106 1.22358 1.02365 0.92015 0.99881 1.23121 0.86889 1.00944 0.94703 1.67708 1.20136 1.20037 1.12674 1.23133 1.01001 0.86957 0.94557 1.22323 0.91803 1.02343 1.00303 1.73292 1.28562 1.07665 1.39438 1.82220 0.95500 1.20897 1.74323 0.88863 0.84499 0.79112 0.78985 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.43 13.64 21.88 0.30 -34.13 14 2 C 0.04 1.60 5.52 85.36 0.47 2.08 14 3 Si 0.96 36.12 24.65 68.60 1.69 37.82 14 4 H -0.20 -6.59 7.11 99.48 0.71 -5.88 14 5 H -0.20 -7.52 6.37 99.42 0.63 -6.89 14 6 H -0.21 -8.00 6.45 99.48 0.64 -7.35 14 7 C -0.40 -19.61 9.91 23.25 0.23 -19.38 14 8 H 0.09 4.77 8.06 -2.91 -0.02 4.75 14 9 C 0.15 7.65 7.23 84.94 0.61 8.26 14 10 N -0.61 -32.00 10.19 -221.42 -2.26 -34.26 14 11 C 0.29 14.42 7.36 138.41 1.02 15.44 14 12 C 0.01 0.48 5.91 -19.83 -0.12 0.36 14 13 C -0.14 -5.08 9.67 22.59 0.22 -4.86 14 14 C 0.10 2.85 11.17 84.62 0.95 3.79 14 15 N -0.50 -14.56 10.35 -196.12 -2.03 -16.59 14 16 C 0.10 2.79 11.17 84.62 0.95 3.74 14 17 C -0.15 -5.01 9.67 22.59 0.22 -4.79 14 18 N -0.65 -32.16 10.72 -83.70 -0.90 -33.06 14 19 S 0.12 5.90 16.31 -56.49 -0.92 4.98 14 20 H 0.30 13.01 8.72 -92.71 -0.81 12.20 14 21 H 0.14 4.98 7.69 -2.91 -0.02 4.96 14 22 H 0.19 3.92 8.06 -2.91 -0.02 3.90 14 23 H 0.19 3.77 8.06 -2.91 -0.02 3.75 14 24 H 0.14 4.76 7.69 -2.91 -0.02 4.73 14 Total: -1.00 -57.93 231.69 1.49 -56.44 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.06 Total: 14.16 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.55 Total: 4.63 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -4.88 Total: -118.03 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 1.69 Total: 37.82 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -0.92 Total: 4.98 kcal Total: -57.93 1.49 -56.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259434686.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.435 kcal (2) G-P(sol) polarization free energy of solvation -57.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds