Wall clock time and date at job start Mon Mar 30 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86809 * 119.99978 * 2 1 4 4 H 1.48496 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46959 * 299.99706 * 3 2 1 6 6 H 1.48499 * 109.47032 * 59.99664 * 3 2 1 7 7 C 1.39948 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00471 * 197.46071 * 7 2 1 9 9 C 1.41044 * 119.99784 * 17.46364 * 7 2 1 10 10 C 1.41324 * 120.95262 * 203.28039 * 9 7 2 11 11 N 1.31618 * 118.89174 * 179.97438 * 10 9 7 12 12 C 1.33080 * 120.99621 * 359.97438 * 11 10 9 13 13 C 1.47604 * 118.93500 * 180.02562 * 12 11 10 14 14 C 1.35262 * 123.08162 * 180.02562 * 13 12 11 15 15 S 1.70961 * 108.76957 * 180.02562 * 14 13 12 16 16 C 1.70797 * 91.04745 * 359.97438 * 15 14 13 17 17 N 1.28790 * 110.47137 * 0.02562 * 16 15 14 18 18 N 1.33081 * 122.12735 * 0.27738 * 12 11 10 19 19 C 1.31614 * 120.99707 * 359.43553 * 18 12 11 20 20 H 0.96994 * 119.99773 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.55887 * 359.97438 * 10 9 7 22 22 H 1.07997 * 125.61461 * 359.97438 * 14 13 12 23 23 H 1.07997 * 124.76689 * 180.26180 * 16 15 14 24 24 H 1.08007 * 120.55470 * 180.25151 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0083 -1.2120 0.0005 8 1 3.0509 -1.2334 0.2812 9 6 1.3518 -2.4054 -0.3655 10 6 1.8309 -3.6616 0.0701 11 7 1.1865 -4.7495 -0.2952 12 6 0.1007 -4.6782 -1.0613 13 6 -0.5869 -5.9272 -1.4435 14 6 -1.6953 -5.9524 -2.2184 15 16 -2.1824 -7.5775 -2.4290 16 6 -0.8782 -8.1253 -1.4717 17 7 -0.1740 -7.1297 -1.0578 18 7 -0.3823 -3.5176 -1.4981 19 6 0.1951 -2.3793 -1.1771 20 1 -0.4849 0.8400 -0.0004 21 1 2.7112 -3.7278 0.6924 22 1 -2.1914 -5.0881 -2.6347 23 1 -0.6709 -9.1614 -1.2482 24 1 -0.2054 -1.4412 -1.5323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601568.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:03 Heat of formation + Delta-G solvation = 75.592691 kcal Electronic energy + Delta-G solvation = -13048.427510 eV Core-core repulsion = 10667.223977 eV Total energy + Delta-G solvation = -2381.203533 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.55896 -38.43225 -34.49286 -32.16130 -31.11609 -29.44113 -26.30031 -24.65528 -22.71514 -22.14567 -19.44329 -18.04738 -17.62563 -16.09232 -15.67752 -14.93940 -14.50412 -14.20883 -13.66220 -12.88500 -12.78671 -12.54373 -12.14079 -11.90994 -11.52501 -11.28945 -11.09203 -10.75178 -9.81652 -9.43540 -9.30717 -9.21283 -9.14017 -8.83561 -7.81508 -7.60298 -7.19313 -4.74785 1.15159 1.86032 2.22735 2.23841 2.82594 2.85329 2.88428 2.93864 3.56395 3.62979 4.42739 4.61118 5.37325 5.57561 5.61953 5.95689 6.20433 6.31355 6.41356 6.71675 6.73917 6.80787 7.48817 7.56015 7.97283 8.18339 8.23191 8.30558 8.79356 9.69412 9.72442 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.072349 B = 0.005692 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.920680 B = 4918.048491 C = 5237.762584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.093 0.907 9 C 0.017 3.983 10 C 0.010 3.990 11 N -0.455 5.455 12 C 0.183 3.817 13 C 0.164 3.836 14 C -0.274 4.274 15 S 0.127 5.873 16 C -0.007 4.007 17 N -0.432 5.432 18 N -0.483 5.483 19 C 0.073 3.927 20 H 0.292 0.708 21 H 0.140 0.860 22 H 0.180 0.820 23 H 0.194 0.806 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -4.605 -3.175 6.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.153 4.153 3 Si 0.745 3.255 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.442 4.442 8 H 0.111 0.889 9 C 0.009 3.991 10 C -0.163 4.163 11 N -0.167 5.167 12 C -0.076 4.076 13 C 0.032 3.968 14 C -0.416 4.416 15 S 0.379 5.621 16 C -0.307 4.307 17 N -0.145 5.145 18 N -0.196 5.196 19 C -0.102 4.102 20 H 0.103 0.897 21 H 0.157 0.843 22 H 0.197 0.803 23 H 0.211 0.789 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.588 -6.015 -3.600 7.875 hybrid contribution 1.212 2.446 0.653 2.807 sum -2.376 -3.568 -2.947 5.202 Atomic orbital electron populations 1.69752 1.07982 1.30731 1.30748 1.26203 0.94958 1.02398 0.91776 0.86003 0.80944 0.79438 0.79079 1.17858 1.19146 1.19450 1.19700 0.98368 0.90527 1.35636 0.88935 1.19373 0.94116 0.94563 0.91051 1.22865 1.02053 0.87676 1.03671 1.67648 1.06230 1.33385 1.09435 1.18891 0.95155 0.88370 1.05146 1.18106 0.92742 0.89663 0.96324 1.26237 1.03920 1.01503 1.09925 1.82423 1.31178 0.99114 1.49421 1.28389 0.96821 1.03035 1.02408 1.66647 1.28549 0.98148 1.21160 1.67600 1.31416 0.98573 1.22039 1.23273 0.95508 0.94395 0.97002 0.89661 0.84268 0.80267 0.78945 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.92 10.91 55.55 0.61 -17.31 14 2 C 0.07 1.53 5.19 -17.33 -0.09 1.44 14 3 Si 0.92 16.45 29.59 -169.99 -5.03 11.42 14 4 H -0.26 -4.50 7.11 56.52 0.40 -4.10 14 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 14 6 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 7 C -0.41 -9.86 9.09 -37.88 -0.34 -10.21 14 8 H 0.09 2.06 7.90 -52.49 -0.41 1.65 14 9 C 0.02 0.43 5.61 -106.49 -0.60 -0.17 14 10 C 0.01 0.25 11.10 -16.47 -0.18 0.07 14 11 N -0.46 -12.10 10.19 -10.59 -0.11 -12.21 14 12 C 0.18 4.78 7.58 -156.42 -1.19 3.59 14 13 C 0.16 3.73 6.69 -84.66 -0.57 3.17 14 14 C -0.27 -5.22 10.57 29.67 0.31 -4.91 14 15 S 0.13 1.79 22.97 -107.50 -2.47 -0.68 14 16 C -0.01 -0.11 12.18 51.49 0.63 0.52 14 17 N -0.43 -9.11 10.47 -12.36 -0.13 -9.23 14 18 N -0.48 -12.61 9.80 -10.59 -0.10 -12.71 14 19 C 0.07 1.91 9.99 -16.47 -0.16 1.74 14 20 H 0.29 6.05 8.30 -40.82 -0.34 5.71 14 21 H 0.14 3.14 8.06 -52.48 -0.42 2.72 14 22 H 0.18 3.33 7.95 -52.49 -0.42 2.92 14 23 H 0.19 2.15 8.06 -52.49 -0.42 1.73 14 24 H 0.16 4.12 6.17 -52.48 -0.32 3.80 14 LS Contribution 239.69 15.07 3.61 3.61 Total: -1.00 -29.16 239.69 -6.95 -36.11 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -1.14 Total: 5.77 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.19 Total: -4.75 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.26 Total: -51.47 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.47 Total: -0.68 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.16 -6.95 -36.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601568.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.701 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds