Wall clock time and date at job start Mon Mar 30 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46889 * 1 3 3 C 1.48534 * 110.99778 * 2 1 4 4 C 1.54937 * 103.22740 * 200.28131 * 3 2 1 5 5 C 1.54592 * 102.92274 * 37.41635 * 4 3 2 6 6 H 1.09000 * 110.39775 * 97.00335 * 5 4 3 7 7 C 1.50706 * 110.31033 * 219.12543 * 5 4 3 8 8 C 1.38969 * 120.70120 * 57.16844 * 7 5 4 9 9 C 1.38750 * 119.55519 * 180.02562 * 8 7 5 10 10 N 1.31424 * 121.01102 * 0.02562 * 9 8 7 11 11 C 1.33605 * 121.52055 * 359.97438 * 10 9 8 12 12 C 1.41403 * 119.83215 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99690 * 180.02562 * 12 11 10 14 14 C 1.40037 * 119.99914 * 359.97438 * 12 11 10 15 15 N 1.30736 * 120.00108 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99859 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47549 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47352 * 120.00005 * 16 14 12 19 19 H 1.48497 * 109.47205 * 240.00379 * 16 14 12 20 20 C 1.38147 * 120.70675 * 237.19060 * 7 5 4 21 21 C 1.47901 * 111.00057 * 242.60950 * 2 1 3 22 22 H 1.09007 * 109.47031 * 177.39629 * 1 2 3 23 23 H 1.09004 * 109.47370 * 297.38823 * 1 2 3 24 24 H 1.08998 * 109.47511 * 57.39675 * 1 2 3 25 25 H 1.08997 * 110.67215 * 318.71739 * 3 2 1 26 26 H 1.08999 * 110.66810 * 81.68273 * 3 2 1 27 27 H 1.08997 * 110.72809 * 279.05636 * 4 3 2 28 28 H 1.08998 * 110.72764 * 155.77484 * 4 3 2 29 29 H 1.08001 * 120.22596 * 0.04665 * 8 7 5 30 30 H 1.07997 * 119.49648 * 179.97438 * 9 8 7 31 31 H 0.97002 * 119.99958 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.50520 * 359.95737 * 20 7 5 33 33 H 1.09003 * 109.91799 * 26.48663 * 21 2 1 34 34 H 1.09001 * 109.91670 * 265.19076 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0011 1.3867 0.0000 4 6 3.4490 1.2107 -0.5228 5 6 3.2981 0.1055 -1.5931 6 1 3.2141 0.5472 -2.5861 7 6 4.4716 -0.8385 -1.5393 8 6 4.7865 -1.5128 -0.3656 9 6 5.8726 -2.3760 -0.3426 10 7 6.6094 -2.5660 -1.4141 11 6 6.3443 -1.9396 -2.5641 12 6 7.1604 -2.1710 -3.6954 13 1 6.9489 -1.6657 -4.6262 14 6 8.2435 -3.0544 -3.6086 15 7 8.4999 -3.6656 -2.4817 16 14 9.3220 -3.3594 -5.1030 17 1 8.8245 -2.5520 -6.2457 18 1 10.7204 -2.9678 -4.7925 19 1 9.2789 -4.8005 -5.4587 20 6 5.2574 -1.0516 -2.6554 21 6 1.9989 -0.6352 -1.2260 22 1 -0.3633 -1.0267 -0.0467 23 1 -0.3634 0.4728 0.9125 24 1 -0.3634 0.5537 -0.8657 25 1 1.4236 2.0205 -0.6728 26 1 2.0013 1.7987 1.0091 27 1 4.1114 0.8837 0.2786 28 1 3.8121 2.1353 -0.9716 29 1 4.1898 -1.3661 0.5225 30 1 6.1167 -2.8991 0.5702 31 1 9.2499 -4.2778 -2.4217 32 1 5.0404 -0.5441 -3.5836 33 1 1.2757 -0.5401 -2.0359 34 1 2.2122 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259612139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:08 Heat of formation + Delta-G solvation = 32.371666 kcal Electronic energy + Delta-G solvation = -15836.635452 eV Core-core repulsion = 13347.896944 eV Total energy + Delta-G solvation = -2488.738509 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19862 -37.60825 -33.79445 -32.70521 -30.11234 -29.80699 -27.95567 -25.70052 -25.26718 -21.82958 -21.46034 -20.90850 -19.52027 -17.09818 -15.80801 -15.66113 -15.08900 -14.32720 -14.14282 -14.00228 -13.83145 -12.96734 -12.81842 -12.26912 -12.24861 -11.95923 -11.44767 -11.40372 -11.30181 -11.13919 -10.97725 -10.84756 -10.58211 -10.48868 -10.08324 -9.71505 -9.30512 -8.30555 -7.93416 -7.54628 -7.48074 -6.34216 -4.46557 2.80588 2.99638 3.11303 3.15511 3.22769 3.97981 4.18414 4.76617 4.94057 5.05881 5.19401 5.43429 5.46491 5.49159 5.68726 5.83418 5.85891 5.95144 6.00703 6.11451 6.18836 6.21738 6.46680 6.51820 6.71240 6.83163 6.97055 7.05685 7.15146 7.20850 7.43243 7.63833 7.86511 8.11173 8.29721 8.72699 8.99708 10.19300 10.37973 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.055513 B = 0.005598 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.265616 B = 5000.537319 C = 5176.950246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.520 5.520 3 C 0.034 3.966 4 C -0.113 4.113 5 C -0.052 4.052 6 H 0.071 0.929 7 C -0.019 4.019 8 C -0.303 4.303 9 C 0.120 3.880 10 N -0.486 5.486 11 C 0.256 3.744 12 C -0.437 4.437 13 H 0.082 0.918 14 C 0.070 3.930 15 N -0.718 5.718 16 Si 0.905 3.095 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.270 4.270 21 C 0.047 3.953 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 6.088 1.950 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.071 4.071 6 H 0.090 0.910 7 C -0.025 4.025 8 C -0.326 4.326 9 C -0.045 4.045 10 N -0.199 5.199 11 C 0.131 3.869 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.155 4.155 15 N -0.340 5.340 16 Si 0.729 3.271 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.293 4.293 21 C -0.080 4.080 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.157 5.072 2.509 9.928 hybrid contribution -0.617 0.847 -1.397 1.746 sum -8.774 5.919 1.112 10.642 Atomic orbital electron populations 1.22495 0.88577 1.01786 1.00348 1.64740 1.07337 1.14789 1.37558 1.23260 0.95707 0.89852 1.00588 1.22587 0.95865 0.97929 0.98765 1.20888 0.93121 0.94665 0.98450 0.91039 1.19384 0.93941 0.95156 0.94048 1.21159 1.04760 1.08618 0.98034 1.22528 0.91142 0.94023 0.96820 1.68737 1.28100 1.24751 0.98287 1.18591 0.89360 0.87577 0.91394 1.19621 1.08935 1.21609 0.96638 0.90025 1.26054 0.97766 0.94926 0.96745 1.70151 1.22290 1.16968 1.24554 0.86319 0.79854 0.78917 0.81981 1.18480 1.19872 1.19870 1.21618 1.01991 1.08152 0.97563 1.22976 0.94803 1.00400 0.89868 0.91490 0.91622 0.95802 0.94268 0.90384 0.89873 0.91453 0.88328 0.86644 0.91789 0.88716 0.94379 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.06 0.56 0.76 16 2 N -0.52 -7.57 5.55 -238.72 -1.33 -8.90 16 3 C 0.03 0.44 6.56 -1.90 -0.01 0.43 16 4 C -0.11 -1.74 6.52 -24.87 -0.16 -1.90 16 5 C -0.05 -0.91 3.24 -90.41 -0.29 -1.20 16 6 H 0.07 1.20 7.98 -51.93 -0.41 0.79 16 7 C -0.02 -0.41 4.72 -104.38 -0.49 -0.91 16 8 C -0.30 -6.81 8.29 -39.12 -0.32 -7.14 16 9 C 0.12 2.97 11.18 -17.54 -0.20 2.78 16 10 N -0.49 -13.69 7.87 -11.13 -0.09 -13.78 16 11 C 0.26 7.12 6.55 -84.98 -0.56 6.56 16 12 C -0.44 -11.91 9.14 -37.70 -0.34 -12.26 16 13 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 14 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 15 N -0.72 -19.55 11.46 55.55 0.64 -18.91 16 16 Si 0.91 18.88 29.56 -169.99 -5.02 13.86 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.27 -6.67 9.50 -38.70 -0.37 -7.04 16 21 C 0.05 0.76 6.15 -2.75 -0.02 0.74 16 22 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.26 8.00 -51.93 -0.42 -0.16 16 25 H 0.04 0.47 7.96 -51.93 -0.41 0.06 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.10 2.06 7.85 -52.49 -0.41 1.65 16 30 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 31 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 32 H 0.09 2.19 8.02 -52.49 -0.42 1.77 16 33 H 0.04 0.56 7.73 -51.93 -0.40 0.16 16 34 H 0.09 1.55 7.33 -51.93 -0.38 1.17 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -29.34 281.15 -8.74 -38.08 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.88 Total: 2.86 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.30 Total: -17.45 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.78 Total: -41.59 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.34 -8.74 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.455 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds