Wall clock time and date at job start Mon Mar 30 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46889 * 1 3 3 C 1.48534 * 110.99778 * 2 1 4 4 C 1.54937 * 103.22740 * 200.28131 * 3 2 1 5 5 C 1.54592 * 102.92274 * 37.41635 * 4 3 2 6 6 H 1.09000 * 110.39775 * 97.00335 * 5 4 3 7 7 C 1.50706 * 110.31033 * 219.12543 * 5 4 3 8 8 C 1.38969 * 120.70120 * 57.16844 * 7 5 4 9 9 C 1.38750 * 119.55519 * 180.02562 * 8 7 5 10 10 N 1.31424 * 121.01102 * 0.02562 * 9 8 7 11 11 C 1.33605 * 121.52055 * 359.97438 * 10 9 8 12 12 C 1.41403 * 119.83215 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99690 * 180.02562 * 12 11 10 14 14 C 1.40037 * 119.99914 * 359.97438 * 12 11 10 15 15 N 1.30736 * 120.00108 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99859 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47549 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47352 * 120.00005 * 16 14 12 19 19 H 1.48497 * 109.47205 * 240.00379 * 16 14 12 20 20 C 1.38147 * 120.70675 * 237.19060 * 7 5 4 21 21 C 1.47901 * 111.00057 * 242.60950 * 2 1 3 22 22 H 1.09007 * 109.47031 * 177.39629 * 1 2 3 23 23 H 1.09004 * 109.47370 * 297.38823 * 1 2 3 24 24 H 1.08998 * 109.47511 * 57.39675 * 1 2 3 25 25 H 1.08997 * 110.67215 * 318.71739 * 3 2 1 26 26 H 1.08999 * 110.66810 * 81.68273 * 3 2 1 27 27 H 1.08997 * 110.72809 * 279.05636 * 4 3 2 28 28 H 1.08998 * 110.72764 * 155.77484 * 4 3 2 29 29 H 1.08001 * 120.22596 * 0.04665 * 8 7 5 30 30 H 1.07997 * 119.49648 * 179.97438 * 9 8 7 31 31 H 0.97002 * 119.99958 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.50520 * 359.95737 * 20 7 5 33 33 H 1.09003 * 109.91799 * 26.48663 * 21 2 1 34 34 H 1.09001 * 109.91670 * 265.19076 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0011 1.3867 0.0000 4 6 3.4490 1.2107 -0.5228 5 6 3.2981 0.1055 -1.5931 6 1 3.2141 0.5472 -2.5861 7 6 4.4716 -0.8385 -1.5393 8 6 4.7865 -1.5128 -0.3656 9 6 5.8726 -2.3760 -0.3426 10 7 6.6094 -2.5660 -1.4141 11 6 6.3443 -1.9396 -2.5641 12 6 7.1604 -2.1710 -3.6954 13 1 6.9489 -1.6657 -4.6262 14 6 8.2435 -3.0544 -3.6086 15 7 8.4999 -3.6656 -2.4817 16 14 9.3220 -3.3594 -5.1030 17 1 8.8245 -2.5520 -6.2457 18 1 10.7204 -2.9678 -4.7925 19 1 9.2789 -4.8005 -5.4587 20 6 5.2574 -1.0516 -2.6554 21 6 1.9989 -0.6352 -1.2260 22 1 -0.3633 -1.0267 -0.0467 23 1 -0.3634 0.4728 0.9125 24 1 -0.3634 0.5537 -0.8657 25 1 1.4236 2.0205 -0.6728 26 1 2.0013 1.7987 1.0091 27 1 4.1114 0.8837 0.2786 28 1 3.8121 2.1353 -0.9716 29 1 4.1898 -1.3661 0.5225 30 1 6.1167 -2.8991 0.5702 31 1 9.2499 -4.2778 -2.4217 32 1 5.0404 -0.5441 -3.5836 33 1 1.2757 -0.5401 -2.0359 34 1 2.2122 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259612139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:08 Heat of formation + Delta-G solvation = 13.837497 kcal Electronic energy + Delta-G solvation = -15837.439154 eV Core-core repulsion = 13347.896944 eV Total energy + Delta-G solvation = -2489.542211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69388 -39.22936 -35.60861 -34.27467 -31.88913 -31.38829 -29.32486 -27.63293 -26.41571 -23.46576 -23.35745 -22.02791 -21.11163 -18.94827 -17.37531 -17.11018 -16.54358 -15.96620 -15.85093 -15.58822 -15.08651 -14.48284 -14.23042 -13.92032 -13.79765 -13.26158 -13.04934 -12.95156 -12.67679 -12.56183 -12.40279 -12.28499 -12.20563 -11.96254 -11.61126 -11.43190 -11.18271 -9.80962 -9.53009 -9.45407 -9.34814 -8.26944 -6.49990 0.92560 1.14053 1.40189 1.53129 1.55924 2.23416 2.85579 3.12487 3.71551 3.76179 3.89720 4.07631 4.24947 4.35234 4.44463 4.46092 4.56420 4.59841 4.72340 4.83772 4.91632 4.97282 4.98745 5.05053 5.08325 5.16907 5.23753 5.31830 5.54706 5.71137 5.89063 6.01506 6.14392 6.18507 6.33530 6.76719 6.99888 8.22961 8.47909 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.055513 B = 0.005598 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.265616 B = 5000.537319 C = 5176.950246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.537 5.537 3 C 0.042 3.958 4 C -0.112 4.112 5 C -0.054 4.054 6 H 0.080 0.920 7 C -0.010 4.010 8 C -0.290 4.290 9 C 0.098 3.902 10 N -0.524 5.524 11 C 0.222 3.778 12 C -0.474 4.474 13 H 0.086 0.914 14 C 0.023 3.977 15 N -0.761 5.761 16 Si 0.988 3.012 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.266 1.266 20 C -0.289 4.289 21 C 0.054 3.946 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.278 0.722 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 7.338 1.711 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.086 4.086 4 C -0.150 4.150 5 C -0.073 4.073 6 H 0.098 0.902 7 C -0.017 4.017 8 C -0.313 4.313 9 C -0.065 4.065 10 N -0.237 5.237 11 C 0.097 3.903 12 C -0.506 4.506 13 H 0.105 0.895 14 C -0.198 4.198 15 N -0.383 5.383 16 Si 0.808 3.192 17 H -0.177 1.177 18 H -0.191 1.191 19 H -0.191 1.191 20 C -0.312 4.312 21 C -0.074 4.074 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.150 0.850 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.483 6.335 2.294 11.633 hybrid contribution -0.336 0.507 -1.202 1.347 sum -9.819 6.841 1.093 12.017 Atomic orbital electron populations 1.22561 0.86617 1.02338 1.01697 1.64711 1.09297 1.15642 1.36540 1.23265 0.93985 0.89463 1.01870 1.22563 0.97386 0.97539 0.97476 1.20955 0.91849 0.94560 0.99946 0.90194 1.19828 0.94441 0.94714 0.92677 1.21354 1.03721 1.07249 0.98949 1.22942 0.91834 0.94912 0.96851 1.68679 1.29722 1.26146 0.99203 1.19056 0.90757 0.88678 0.91799 1.19989 1.10411 1.23204 0.96974 0.89540 1.27008 0.98707 0.93967 1.00073 1.70252 1.23275 1.17808 1.26986 0.85088 0.77566 0.78975 0.77601 1.17715 1.19061 1.19079 1.21793 1.02073 1.08303 0.99015 1.22792 0.94425 0.98902 0.91258 0.91429 0.89956 0.94704 0.92394 0.88800 0.91701 0.89962 0.86389 0.85028 0.91174 0.87793 0.92804 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.40 127.69 1.20 1.52 16 2 N -0.54 -14.04 5.55 -909.17 -5.05 -19.09 16 3 C 0.04 0.94 6.56 86.65 0.57 1.51 16 4 C -0.11 -3.14 6.52 31.80 0.21 -2.93 16 5 C -0.05 -1.79 3.24 -10.66 -0.03 -1.83 16 6 H 0.08 2.52 7.98 -2.39 -0.02 2.50 16 7 C -0.01 -0.44 4.72 -19.71 -0.09 -0.53 16 8 C -0.29 -13.02 8.29 22.57 0.19 -12.83 16 9 C 0.10 4.97 11.18 84.88 0.95 5.92 16 10 N -0.52 -30.54 7.87 -189.11 -1.49 -32.03 16 11 C 0.22 12.80 6.55 40.24 0.26 13.06 16 12 C -0.47 -26.69 9.14 23.49 0.21 -26.47 16 13 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 14 C 0.02 1.24 5.50 85.29 0.47 1.70 16 15 N -0.76 -42.67 11.46 21.84 0.25 -42.42 16 16 Si 0.99 39.20 29.56 68.60 2.03 41.23 16 17 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.29 -14.53 9.50 22.84 0.22 -14.31 16 21 C 0.05 1.63 6.15 86.45 0.53 2.16 16 22 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 0.62 8.00 -2.39 -0.02 0.60 16 25 H 0.06 1.13 7.96 -2.39 -0.02 1.11 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.07 7.00 -2.39 -0.02 2.05 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.12 4.80 7.85 -2.91 -0.02 4.78 16 30 H 0.13 5.99 8.06 -2.91 -0.02 5.97 16 31 H 0.28 14.01 8.29 -92.71 -0.77 13.24 16 32 H 0.10 4.87 8.02 -2.91 -0.02 4.84 16 33 H 0.05 1.44 7.73 -2.39 -0.02 1.42 16 34 H 0.06 2.14 7.33 -2.39 -0.02 2.12 16 Total: -1.00 -64.92 281.15 1.49 -63.42 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 1.07 Total: 21.91 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.68 Total: -33.03 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -6.29 Total: -93.54 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -64.92 1.49 -63.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.260 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds