Wall clock time and date at job start Mon Mar 30 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48562 * 110.99842 * 2 1 4 4 C 1.54379 * 104.59486 * 200.96032 * 3 2 1 5 5 C 1.54266 * 105.05973 * 23.85004 * 4 3 2 6 6 H 1.09003 * 110.32265 * 241.10234 * 5 4 3 7 7 C 1.50699 * 110.32266 * 118.89787 * 5 4 3 8 8 C 1.38967 * 120.70536 * 300.00204 * 7 5 4 9 9 C 1.38760 * 119.55782 * 180.02562 * 8 7 5 10 10 N 1.31428 * 121.00965 * 0.02562 * 9 8 7 11 11 C 1.33603 * 121.51650 * 359.97438 * 10 9 8 12 12 C 1.41404 * 119.82592 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99880 * 179.97438 * 12 11 10 14 14 C 1.40038 * 119.99925 * 359.97438 * 12 11 10 15 15 N 1.30737 * 120.00201 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99710 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46912 * 60.00660 * 16 14 12 18 18 H 1.48503 * 109.46935 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47258 * 300.00257 * 16 14 12 20 20 C 1.38151 * 120.70647 * 119.71857 * 7 5 4 21 21 C 1.48562 * 111.00142 * 244.57836 * 2 1 3 22 22 H 1.08999 * 109.47456 * 59.87785 * 1 2 3 23 23 H 1.09004 * 109.46834 * 179.87715 * 1 2 3 24 24 H 1.08998 * 109.47207 * 299.87566 * 1 2 3 25 25 H 1.08998 * 110.41528 * 82.17831 * 3 2 1 26 26 H 1.08997 * 110.50874 * 319.78619 * 3 2 1 27 27 H 1.08996 * 110.32596 * 264.95760 * 4 3 2 28 28 H 1.08997 * 110.32827 * 142.74551 * 4 3 2 29 29 H 1.07999 * 120.22261 * 359.97438 * 8 7 5 30 30 H 1.08001 * 119.49322 * 179.97438 * 9 8 7 31 31 H 0.97000 * 119.99882 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.50833 * 0.02562 * 20 7 5 33 33 H 1.09000 * 110.41111 * 40.26361 * 21 2 1 34 34 H 1.08989 * 110.41482 * 277.81625 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4432 -0.0539 -1.3585 6 1 4.1483 -0.7693 -0.9351 7 6 3.7894 0.2355 -2.7963 8 6 3.0000 1.0883 -3.5584 9 6 3.3406 1.3377 -4.8803 10 7 4.3989 0.7791 -5.4238 11 6 5.1866 -0.0471 -4.7297 12 6 6.3162 -0.6289 -5.3503 13 1 6.9551 -1.2968 -4.7917 14 6 6.6063 -0.3389 -6.6893 15 7 5.8331 0.4701 -7.3653 16 14 8.0981 -1.1080 -7.5094 17 1 7.9701 -2.5872 -7.4823 18 1 8.1832 -0.6438 -8.9174 19 1 9.3271 -0.7040 -6.7803 20 6 4.9015 -0.3367 -3.3831 21 6 2.0014 -0.5954 -1.2526 22 1 -0.3634 0.5157 -0.8889 23 1 -0.3633 -1.0277 -0.0022 24 1 -0.3633 0.5119 0.8911 25 1 2.0078 1.7917 1.0120 26 1 1.4103 2.0228 -0.6591 27 1 4.1482 1.1749 0.2934 28 1 3.6936 2.0996 -1.1700 29 1 2.1269 1.5532 -3.1251 30 1 2.7261 2.0003 -5.4718 31 1 6.0344 0.6712 -8.2927 32 1 5.5389 -1.0009 -2.8183 33 1 1.4099 -0.2713 -2.1089 34 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259612145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:10 Heat of formation + Delta-G solvation = 13.240631 kcal Electronic energy + Delta-G solvation = -15863.057828 eV Core-core repulsion = 13373.489735 eV Total energy + Delta-G solvation = -2489.568093 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73819 -39.22693 -35.62486 -34.29871 -31.91371 -31.38986 -29.35921 -27.66641 -26.45686 -23.47775 -23.40585 -22.02574 -21.10350 -18.94693 -17.38898 -17.15013 -16.56366 -16.00028 -15.92605 -15.44057 -15.18976 -14.58095 -14.19117 -14.15055 -13.72381 -13.35990 -12.94741 -12.83471 -12.77161 -12.62261 -12.39142 -12.35599 -12.15443 -12.01456 -11.61333 -11.42858 -11.17444 -9.85817 -9.59575 -9.48659 -9.44661 -8.29046 -6.52450 0.90227 1.11173 1.39879 1.52569 1.54614 2.22677 2.83600 3.08031 3.70980 3.77920 3.94203 4.04759 4.21705 4.31244 4.42797 4.47589 4.56735 4.60111 4.69612 4.82509 4.84473 4.91037 4.98678 5.00485 5.09744 5.15525 5.18827 5.30396 5.50527 5.65744 5.81767 5.93856 6.05793 6.16451 6.30154 6.74049 6.97140 8.20030 8.45414 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.055755 B = 0.005638 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.077657 B = 4965.450841 C = 5148.728564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.523 5.523 3 C 0.037 3.963 4 C -0.111 4.111 5 C -0.047 4.047 6 H 0.079 0.921 7 C -0.011 4.011 8 C -0.299 4.299 9 C 0.102 3.898 10 N -0.524 5.524 11 C 0.223 3.777 12 C -0.473 4.473 13 H 0.087 0.913 14 C 0.024 3.976 15 N -0.759 5.759 16 Si 0.988 3.012 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.288 4.288 21 C 0.047 3.953 22 H 0.026 0.974 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.134 0.866 31 H 0.279 0.721 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 0.152 9.888 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.247 5.247 3 C -0.091 4.091 4 C -0.149 4.149 5 C -0.066 4.066 6 H 0.097 0.903 7 C -0.017 4.017 8 C -0.322 4.322 9 C -0.062 4.062 10 N -0.238 5.238 11 C 0.098 3.902 12 C -0.504 4.504 13 H 0.106 0.894 14 C -0.197 4.197 15 N -0.381 5.381 16 Si 0.807 3.193 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.311 4.311 21 C -0.081 4.081 22 H 0.044 0.956 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.151 0.849 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.409 0.112 9.297 10.757 hybrid contribution 0.026 0.074 -0.547 0.553 sum -5.384 0.186 8.750 10.275 Atomic orbital electron populations 1.22570 0.86898 1.02787 1.01389 1.65411 1.09341 1.15697 1.34252 1.23143 0.94378 0.89850 1.01693 1.22335 0.97522 0.96166 0.98864 1.20793 0.97080 0.98147 0.90599 0.90274 1.19869 0.93142 0.93904 0.94827 1.21273 1.04942 1.09639 0.96329 1.22937 0.94032 0.96231 0.93040 1.68687 1.05814 1.12107 1.37161 1.19047 0.92368 0.89395 0.89344 1.19968 1.08364 1.24970 0.97097 0.89443 1.27010 1.00512 0.94452 0.97764 1.70231 1.34289 1.24362 1.09227 0.85193 0.77347 0.79330 0.77394 1.18249 1.19213 1.18240 1.21792 1.02425 1.09895 0.96966 1.23112 0.93800 1.00028 0.91162 0.95557 0.90726 0.89692 0.88318 0.93838 0.89974 0.92054 0.86791 0.84909 0.91086 0.87754 0.94053 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.53 127.69 1.22 1.46 16 2 N -0.52 -13.42 5.66 -907.65 -5.14 -18.56 16 3 C 0.04 0.90 6.49 86.45 0.56 1.46 16 4 C -0.11 -3.17 6.45 31.49 0.20 -2.97 16 5 C -0.05 -1.59 3.30 -10.64 -0.04 -1.62 16 6 H 0.08 2.64 7.99 -2.39 -0.02 2.62 16 7 C -0.01 -0.47 4.74 -19.71 -0.09 -0.56 16 8 C -0.30 -13.00 8.34 22.57 0.19 -12.81 16 9 C 0.10 5.02 11.18 84.88 0.95 5.97 16 10 N -0.52 -30.12 7.87 -189.10 -1.49 -31.60 16 11 C 0.22 12.74 6.55 40.24 0.26 13.00 16 12 C -0.47 -26.37 9.14 23.49 0.21 -26.15 16 13 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 14 C 0.02 1.25 5.50 85.29 0.47 1.72 16 15 N -0.76 -42.08 11.46 21.84 0.25 -41.83 16 16 Si 0.99 38.80 29.56 68.60 2.03 40.83 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C -0.29 -14.40 9.50 22.84 0.22 -14.18 16 21 C 0.05 1.42 5.95 86.45 0.51 1.93 16 22 H 0.03 0.55 7.98 -2.39 -0.02 0.53 16 23 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.06 7.97 -2.39 -0.02 1.04 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.93 7.39 -2.39 -0.02 1.91 16 29 H 0.11 4.32 7.71 -2.91 -0.02 4.30 16 30 H 0.13 5.85 8.06 -2.91 -0.02 5.83 16 31 H 0.28 13.95 8.29 -92.71 -0.77 13.18 16 32 H 0.10 4.89 8.02 -2.91 -0.02 4.87 16 33 H 0.04 1.34 6.61 -2.39 -0.02 1.33 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -63.41 281.11 1.39 -62.01 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.07 Total: 21.91 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 4.67 Total: -32.76 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -6.37 Total: -91.99 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -63.41 1.39 -62.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.254 kcal (2) G-P(sol) polarization free energy of solvation -63.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds