Wall clock time and date at job start Mon Mar 30 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48493 * 109.47036 * 269.99971 * 3 2 1 5 5 H 1.48498 * 109.46892 * 30.00074 * 3 2 1 6 6 H 1.48501 * 109.47151 * 150.00115 * 3 2 1 7 7 C 1.38697 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99574 * 179.97438 * 7 2 1 9 9 O 1.34843 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.35554 * 116.99899 * 179.97438 * 9 7 2 11 11 N 1.30398 * 125.83211 * 0.18480 * 10 9 7 12 12 O 1.41651 * 107.92723 * 180.28567 * 11 10 9 13 13 N 1.41668 * 107.63415 * 359.70744 * 12 11 10 14 14 C 1.30688 * 107.82421 * 359.97438 * 13 12 11 15 15 C 1.48379 * 125.86215 * 180.02562 * 14 13 12 16 16 C 1.39758 * 120.90951 * 145.00337 * 15 14 13 17 17 C 1.38012 * 119.02245 * 180.02562 * 16 15 14 18 18 N 1.31904 * 120.88025 * 359.97438 * 17 16 15 19 19 C 1.31899 * 122.00795 * 0.02562 * 18 17 16 20 20 C 1.38009 * 120.88557 * 359.97438 * 19 18 17 21 21 H 0.96996 * 120.00270 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.48677 * 0.03351 * 16 15 14 23 23 H 1.08005 * 119.55885 * 180.27732 * 17 16 15 24 24 H 1.08008 * 119.55392 * 180.02562 * 19 18 17 25 25 H 1.08000 * 120.49388 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2011 0.0001 9 8 1.3344 -2.3689 0.0005 10 6 2.0727 -3.5058 0.0005 11 7 3.3751 -3.5702 0.0039 12 8 3.7440 -4.9378 -0.0042 13 7 2.5522 -5.7038 -0.0060 14 6 1.5430 -4.8735 0.0011 15 6 0.1078 -5.2498 0.0026 16 6 -0.8341 -4.4855 0.6969 17 6 -2.1589 -4.8715 0.6725 18 7 -2.5393 -5.9443 0.0059 19 6 -1.6828 -6.6926 -0.6620 20 6 -0.3392 -6.3783 -0.6901 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5296 -3.6056 1.2443 23 1 -2.8947 -4.2846 1.2022 24 1 -2.0378 -7.5626 -1.1946 25 1 0.3565 -6.9953 -1.2394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259672687.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:28 Heat of formation + Delta-G solvation = 97.737667 kcal Electronic energy + Delta-G solvation = -15318.424105 eV Core-core repulsion = 12495.427979 eV Total energy + Delta-G solvation = -2822.996126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48437 -39.57913 -37.68328 -33.88318 -32.67699 -31.17945 -30.75475 -30.68146 -25.91764 -24.47558 -23.36641 -21.78898 -20.63272 -18.20138 -17.67311 -16.56423 -16.04261 -15.53791 -15.31776 -14.91836 -14.46687 -13.82243 -13.67185 -13.48946 -13.32536 -13.01991 -12.20035 -11.76516 -11.47818 -11.23178 -11.06847 -10.78562 -10.57331 -10.08032 -9.58310 -9.46285 -9.28382 -9.04683 -8.60076 -6.77230 -4.42416 0.70515 1.25766 1.72367 2.83382 2.97881 3.06624 3.10400 3.28310 3.54363 3.89574 4.02919 4.21821 4.54544 4.76713 4.93161 5.02548 5.14494 5.25253 5.71122 5.83675 5.91916 6.05260 6.20724 6.40243 6.75018 7.03980 7.59048 7.91374 8.02441 8.66184 9.13708 10.38151 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.008508 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.193273 B = 3290.039266 C = 4290.626462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.048 3.952 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.391 4.391 8 H 0.103 0.897 9 O -0.138 6.138 10 C 0.241 3.759 11 N -0.373 5.373 12 O 0.006 5.994 13 N -0.280 5.280 14 C 0.128 3.872 15 C 0.013 3.987 16 C -0.117 4.117 17 C 0.101 3.899 18 N -0.479 5.479 19 C 0.092 3.908 20 C -0.140 4.140 21 H 0.277 0.723 22 H 0.152 0.848 23 H 0.164 0.836 24 H 0.159 0.841 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -6.370 0.217 7.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.160 4.160 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.121 0.879 9 O -0.027 6.027 10 C 0.027 3.973 11 N -0.163 5.163 12 O -0.125 6.125 13 N -0.023 5.023 14 C -0.057 4.057 15 C 0.003 3.997 16 C -0.139 4.139 17 C -0.056 4.056 18 N -0.189 5.189 19 C -0.065 4.065 20 C -0.162 4.162 21 H 0.087 0.913 22 H 0.170 0.830 23 H 0.181 0.819 24 H 0.177 0.823 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.587 -6.941 0.221 7.816 hybrid contribution 0.734 1.436 -0.084 1.615 sum -2.853 -5.505 0.137 6.202 Atomic orbital electron populations 1.70000 1.06009 1.28699 1.43708 1.25416 0.96070 0.99031 0.95438 0.85526 0.79085 0.78719 0.79141 1.19474 1.19901 1.18700 1.21537 0.92569 0.79092 1.53693 0.87901 1.84111 1.30812 1.10125 1.77691 1.24157 0.88057 0.89032 0.96067 1.80339 1.09900 0.91740 1.34315 1.93135 1.21009 1.11015 1.87332 1.79731 0.93108 1.17387 1.12027 1.23277 0.94132 0.88976 0.99304 1.18103 0.88158 0.95501 0.97931 1.22417 0.93603 0.99717 0.98119 1.22722 0.94106 0.92942 0.95785 1.67602 1.38998 1.05419 1.06845 1.22629 0.88957 0.98546 0.96374 1.22207 0.97840 0.96436 0.99674 0.91303 0.83012 0.81926 0.82344 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.57 13.67 55.48 0.76 -21.81 15 2 C 0.05 1.22 5.49 -17.51 -0.10 1.13 15 3 Si 0.95 19.55 29.55 -169.99 -5.02 14.53 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 5 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 15 7 C -0.39 -10.48 9.73 30.90 0.30 -10.18 15 8 H 0.10 2.74 7.03 -52.49 -0.37 2.37 15 9 O -0.14 -3.62 8.92 0.61 0.01 -3.62 15 10 C 0.24 5.77 7.89 -14.76 -0.12 5.65 15 11 N -0.37 -9.12 11.85 31.79 0.38 -8.75 15 12 O 0.01 0.13 13.63 12.23 0.17 0.30 15 13 N -0.28 -5.74 12.95 34.51 0.45 -5.29 15 14 C 0.13 2.63 6.94 -80.78 -0.56 2.07 15 15 C 0.01 0.22 5.89 -104.59 -0.62 -0.39 15 16 C -0.12 -1.98 9.47 -39.10 -0.37 -2.35 15 17 C 0.10 1.49 11.17 -17.60 -0.20 1.29 15 18 N -0.48 -7.08 10.35 -13.33 -0.14 -7.22 15 19 C 0.09 1.21 11.17 -17.61 -0.20 1.01 15 20 C -0.14 -2.04 9.87 -39.10 -0.39 -2.42 15 21 H 0.28 6.73 8.31 -40.82 -0.34 6.39 15 22 H 0.15 2.75 7.45 -52.48 -0.39 2.36 15 23 H 0.16 1.96 8.06 -52.48 -0.42 1.54 15 24 H 0.16 1.51 8.06 -52.48 -0.42 1.08 15 25 H 0.14 1.78 8.06 -52.49 -0.42 1.35 15 LS Contribution 246.84 15.07 3.72 3.72 Total: -1.00 -29.11 246.84 -3.09 -32.20 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -1.16 Total: 0.14 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.24 Total: -4.20 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 1.44 Total: -43.07 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.17 Total: -3.32 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.11 -3.09 -32.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672687.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.940 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds