Wall clock time and date at job start Mon Mar 30 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48493 * 109.47036 * 269.99971 * 3 2 1 5 5 H 1.48498 * 109.46892 * 30.00074 * 3 2 1 6 6 H 1.48501 * 109.47151 * 150.00115 * 3 2 1 7 7 C 1.38697 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99574 * 179.97438 * 7 2 1 9 9 O 1.34843 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.35554 * 116.99899 * 179.97438 * 9 7 2 11 11 N 1.30398 * 125.83211 * 0.18480 * 10 9 7 12 12 O 1.41651 * 107.92723 * 180.28567 * 11 10 9 13 13 N 1.41668 * 107.63415 * 359.70744 * 12 11 10 14 14 C 1.30688 * 107.82421 * 359.97438 * 13 12 11 15 15 C 1.48379 * 125.86215 * 180.02562 * 14 13 12 16 16 C 1.39758 * 120.90951 * 145.00337 * 15 14 13 17 17 C 1.38012 * 119.02245 * 180.02562 * 16 15 14 18 18 N 1.31904 * 120.88025 * 359.97438 * 17 16 15 19 19 C 1.31899 * 122.00795 * 0.02562 * 18 17 16 20 20 C 1.38009 * 120.88557 * 359.97438 * 19 18 17 21 21 H 0.96996 * 120.00270 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.48677 * 0.03351 * 16 15 14 23 23 H 1.08005 * 119.55885 * 180.27732 * 17 16 15 24 24 H 1.08008 * 119.55392 * 180.02562 * 19 18 17 25 25 H 1.08000 * 120.49388 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2011 0.0001 9 8 1.3344 -2.3689 0.0005 10 6 2.0727 -3.5058 0.0005 11 7 3.3751 -3.5702 0.0039 12 8 3.7440 -4.9378 -0.0042 13 7 2.5522 -5.7038 -0.0060 14 6 1.5430 -4.8735 0.0011 15 6 0.1078 -5.2498 0.0026 16 6 -0.8341 -4.4855 0.6969 17 6 -2.1589 -4.8715 0.6725 18 7 -2.5393 -5.9443 0.0059 19 6 -1.6828 -6.6926 -0.6620 20 6 -0.3392 -6.3783 -0.6901 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5296 -3.6056 1.2443 23 1 -2.8947 -4.2846 1.2022 24 1 -2.0378 -7.5626 -1.1946 25 1 0.3565 -6.9953 -1.2394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259672687.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:28 Heat of formation + Delta-G solvation = 76.613879 kcal Electronic energy + Delta-G solvation = -15319.340102 eV Core-core repulsion = 12495.427979 eV Total energy + Delta-G solvation = -2823.912122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.16345 -40.90452 -39.59583 -35.39041 -34.61039 -32.62824 -32.36096 -32.17615 -27.88032 -25.91285 -24.62047 -23.49946 -22.22801 -20.10528 -19.37397 -18.14671 -17.46956 -17.01912 -16.84701 -16.52335 -16.13414 -15.36192 -15.25337 -14.96071 -14.68945 -14.63771 -13.95643 -13.39339 -12.92884 -12.89833 -12.84069 -12.35043 -12.17507 -12.00815 -11.43110 -10.75881 -10.65392 -10.46880 -10.20210 -8.70691 -6.47163 -0.80771 0.10003 0.16334 1.10961 1.26338 1.45336 1.46068 1.58431 1.90093 2.27632 2.36762 2.78952 2.82262 3.36143 3.52089 3.79406 3.90894 4.03470 4.13592 4.37854 4.55518 4.80092 4.85811 5.01681 5.12060 5.59770 5.66532 6.06090 6.69490 6.87397 7.17152 8.47486 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.008508 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.193273 B = 3290.039266 C = 4290.626462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.008 3.992 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.426 4.426 8 H 0.095 0.905 9 O -0.156 6.156 10 C 0.232 3.768 11 N -0.392 5.392 12 O -0.003 6.003 13 N -0.270 5.270 14 C 0.143 3.857 15 C -0.014 4.014 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.484 5.484 19 C 0.105 3.895 20 C -0.132 4.132 21 H 0.286 0.714 22 H 0.129 0.871 23 H 0.186 0.814 24 H 0.204 0.796 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -6.975 -0.273 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.196 4.196 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.113 0.887 9 O -0.047 6.047 10 C 0.017 3.983 11 N -0.179 5.179 12 O -0.132 6.132 13 N -0.015 5.015 14 C -0.042 4.042 15 C -0.023 4.023 16 C -0.155 4.155 17 C -0.050 4.050 18 N -0.194 5.194 19 C -0.052 4.052 20 C -0.153 4.153 21 H 0.095 0.905 22 H 0.147 0.853 23 H 0.203 0.797 24 H 0.221 0.779 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.458 -7.549 -0.265 8.771 hybrid contribution 0.945 1.448 0.056 1.730 sum -3.513 -6.101 -0.209 7.043 Atomic orbital electron populations 1.70070 1.07446 1.30189 1.44170 1.26534 0.97018 1.01997 0.94068 0.84571 0.77825 0.74095 0.79664 1.18473 1.18211 1.18483 1.21790 0.92605 0.79965 1.55963 0.88681 1.84113 1.31388 1.10590 1.78587 1.24593 0.88349 0.89863 0.95447 1.80269 1.10633 0.93206 1.33822 1.93115 1.22131 1.10154 1.87819 1.79738 0.92312 1.16493 1.12958 1.23601 0.95704 0.87175 0.97749 1.18239 0.86402 0.97526 1.00173 1.22323 0.94706 0.99451 0.98974 1.23026 0.93446 0.93087 0.95474 1.67734 1.39346 1.05377 1.06935 1.23340 0.87996 0.98890 0.94938 1.22470 0.99023 0.95145 0.98711 0.90481 0.85262 0.79663 0.77927 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.49 13.67 21.62 0.30 -47.19 15 2 C 0.01 0.39 5.49 84.85 0.47 0.86 15 3 Si 1.02 39.73 29.55 68.60 2.03 41.76 15 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 5 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 7 C -0.43 -23.51 9.73 67.93 0.66 -22.85 15 8 H 0.10 5.24 7.03 -2.91 -0.02 5.22 15 9 O -0.16 -8.51 8.92 -20.72 -0.18 -8.69 15 10 C 0.23 11.43 7.89 87.11 0.69 12.12 15 11 N -0.39 -19.62 11.85 -167.18 -1.98 -21.60 15 12 O 0.00 -0.13 13.63 71.15 0.97 0.84 15 13 N -0.27 -10.99 12.95 -44.73 -0.58 -11.57 15 14 C 0.14 5.90 6.94 44.22 0.31 6.21 15 15 C -0.01 -0.47 5.89 -19.84 -0.12 -0.59 15 16 C -0.13 -4.50 9.47 22.58 0.21 -4.29 15 17 C 0.11 2.97 11.17 84.63 0.95 3.91 15 18 N -0.48 -12.94 10.35 -196.10 -2.03 -14.97 15 19 C 0.11 2.38 11.17 84.63 0.95 3.32 15 20 C -0.13 -3.50 9.87 22.58 0.22 -3.28 15 21 H 0.29 13.87 8.31 -92.71 -0.77 13.10 15 22 H 0.13 4.94 7.45 -2.91 -0.02 4.91 15 23 H 0.19 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.20 2.76 8.06 -2.91 -0.02 2.73 15 25 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -63.31 246.84 4.09 -59.22 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.24 Total: 6.80 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.33 Total: -4.60 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -4.29 Total: -95.32 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.78 Total: -7.86 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -63.31 4.09 -59.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672687.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.836 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds